Gene
| Gene Model ID | pfu_aug2.0_1380.1_01586 |
|---|---|
| Locus | scaffold1380.1 : 5146 ... 33409 : + |
| To GenomeBrowser | scaffold1380.1:5146..33409 |
| Genes list of scaffold | scaffold1380.1 |
| Synonym | pfu_aug1.0_9562.1_53371 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| usp6 n-terminal-like protein isoform x2 | GO:0007030 GO:0016192 GO:0044464 GO:1902582 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1380.1_01586.t1 | 1 | 1 | RabGAP-TBC | 109 | 315 | 0.0 | 189.4 | 0.0 | 0.0 | 188.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1380.1_01586.t1 | gi|676473812|ref|XP_009059941.1| | hypothetical protein LOTGIDRAFT_72266, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1380.1_01586.t1 | gi|585680300|ref|XP_006819667.1| | PREDICTED: USP6 N-terminal-like protein-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1380.1_01586.t1 | gi|163916009|gb|AAI57166.1| | LOC100135167 protein [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_1380.1_01586.t1 | gi|242022316|ref|XP_002431586.1| | conserved hypothetical protein [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_1380.1_01586.t1 | gi|704184825|ref|XP_010136710.1| | PREDICTED: USP6 N-terminal-like protein, partial [Buceros rhinoceros silvestris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1380.1_01586.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1380.1_01586.t1 atggcgtcacccagcttggatgaatacgatgagatacggcgagcagcagtggagagggaggaaattgtcgccaagtatga caaggggcgagaggagggtgcacagattgatgaatgggaggatcccaaacttgagctttatcatgtcatggacagatatg gctttatacacaactaccacctaccaccaggccaggatgctgcagagaagaaggcaaagttgttagaggttgagagaaca cagaaatggctgaaaatgatcaaatcatgggaaaagtactttcctggagaaaaggttcagaggagaatatataaggggat cccagacaagttacgaggagaggtgtggaaccgacttctctctgttaccaaaaccaagaccgagcaggagggaatctatg ctaaaatgaaggagcgtgccaggaagaagtccccacatatcagacagattgaccttgatgtaaatagaacgtacagaaat catgacatgttcagggctagatatggagtcaagcaacaagccctgtttcatgtactggctgcgtactctacctataacac agaagtaggctattgtcagggaatgagtgaaatagctgcattactactcatgtatctaaatgaagaggattcattctggg cattatcacagttattctgtagtaagcgacatggaatgcatggaatgttcatacatgggtttccaaagctacttcgattc caagaacaccacgacaatgtcttgaagaagtttctacccaaagtcaggcgctattttgataagaatgatatctacacaag tctgtacaccattaagtggttcctccagtgttttcttgatagggtgccctttactttgactctgagactatgggatgtct ttctgtttgaaggagagaagctactgacatgcatggcttacactataattaaactacatcggagtgattcagagataggt agtatctcaggattaagacaaacgccgatctcggacgaaggtatggatggatttgacgagcatttagtcacagcaatgcc atcaagggagactactattgaaaacctagctgatgaattacgaactccttctgttcattcggattatgataatatggaga atggactcggtaaccatgacgatatggacgttaccatgacagaggtatccatgagacacgagataccagtggaacacatg agacaagaaataccggtacaacatatccctgccagtaaatctgatagttatatcaaacatctgcagcgtgtcaacggcag tgagtcttggacagatcgtggtgaggataaagtggtggaacaatctgatgttctatctcgtgaagatgtgaatcgtttgt caaactcgagcaaacgaggtgtaagaagtgaacacgatctgcatacaggatcaccccgctatgtctctaaggtggagata actccacacaaacaaccctattctccacagagtaacggctacctcagcgaaatgaatggctttaataatcactatgacaa aaattaa |
|
Protein
| Protein ID | pfu_aug2.0_1380.1_01586.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1380.1_01586.t1 MASPSLDEYDEIRRAAVEREEIVAKYDKGREEGAQIDEWEDPKLELYHVMDRYGFIHNYHLPPGQDAAEKKAKLLEVERT QKWLKMIKSWEKYFPGEKVQRRIYKGIPDKLRGEVWNRLLSVTKTKTEQEGIYAKMKERARKKSPHIRQIDLDVNRTYRN HDMFRARYGVKQQALFHVLAAYSTYNTEVGYCQGMSEIAALLLMYLNEEDSFWALSQLFCSKRHGMHGMFIHGFPKLLRF QEHHDNVLKKFLPKVRRYFDKNDIYTSLYTIKWFLQCFLDRVPFTLTLRLWDVFLFEGEKLLTCMAYTIIKLHRSDSEIG SISGLRQTPISDEGMDGFDEHLVTAMPSRETTIENLADELRTPSVHSDYDNMENGLGNHDDMDVTMTEVSMRHEIPVEHM RQEIPVQHIPASKSDSYIKHLQRVNGSESWTDRGEDKVVEQSDVLSREDVNRLSNSSKRGVRSEHDLHTGSPRYVSKVEI TPHKQPYSPQSNGYLSEMNGFNNHYDKN |
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