Gene
| Gene Model ID | pfu_aug2.0_139.1_30270 |
|---|---|
| Locus | scaffold139.1 : 129890 ... 144595 : - |
| To GenomeBrowser | scaffold139.1:129890..144595 |
| Genes list of scaffold | scaffold139.1 |
| Synonym | pfu_aug1.0_12035.1_10405 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_139.1_30270.t1 | 1 | 1 | TAF | 20 | 58 | 4.6e-09 | 36.1 | 2.1e-12 | 1.6e-08 | 34.3 |
| pfu_aug2.0_139.1_30270.t1 | 1 | 1 | DUF1546 | 127 | 218 | 1.7e-17 | 63.2 | 6.1e-21 | 4.5e-17 | 61.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_139.1_30270.t1 | gi|585670959|ref|XP_006817968.1| | PREDICTED: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_139.1_30270.t1 | gi|674058329|ref|XP_008835729.1| | PREDICTED: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X2 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_139.1_30270.t1 | gi|597784516|ref|XP_007255762.1| | PREDICTED: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like [Astyanax mexicanus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_139.1_30270.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30270.t1 atgacagaaaaagaagaaaaaaggacactggcacctgcagacgagagacgttatgctataattaccaaggagacgattcg tctgatagcggaggcagcaggtcatactgatatcactgatgaagctgctgccgtattaggagaggatgtcagctacaggc tgagggagtctacacatatggggatgagagatctgtccaccaatgctcagattgtccctttagttccacatctagtcacc ttcatttgtaccgaggtaagggcctccagctatgatgtaagtcagatgacaaaggttctacatatggtcaaggcattggt cagtaacccttatctctatctggaaccacactcttgtttaagtcagcttgtacagggtgtaacatactgcctattggaac cactggctgcttccatcaacccacgtaatgatcactgggtgttaagggattatgctgcctttctactagcacagatattg aacatttggtccagtcctatcaaccatataatgatgaacacagtacgcagtatgaaggaagtcctttatgatcacactaa acctttctgttgtcattatggagctgtgatggggctgctaaacttaggatctaagacgttagaggatattctcattactc acttaccccattactggccccatttaatggcagccattgaggacacatcatactccaacatggccaccaaggcagatgcg cacaaagtctacggagctatgctgtgtgatttacccttccgaatgcgggaaaaatttgagaaattccatgacatcacaat gcaatttcaatgttttaccaaggttcgaagcttgtttgtccgagaattgtgggaagaattcatggagcaagtgaagatac agcagaaacttgacagggaaagaatggaaagggaacgaatgcagagacagatagactatgaaaaacgtgaacgtgaaaga cggctccaagaggagcatcatagacttatggaggctgggaagaaaaggttagaggaaatacgacaagctgagatagcaag agaaaaggaagaaatggagagactagagcatgaacagagaagaaataaaaagatagcggagcaaagaatttcaaaaatgt tacaatcagacgatgaagatgatttcgaagatgaatttgtgccataccataagccaaaaagatttcggcagcgcagcatg gtacagtattcagaaatgcccgaggatgctgacgtagaaatgaggtcagatatttccgatgaagaacaaggtagtagtgc atctgctgcttcaaatgtagatttggcagtcaaacctggtcaaggtatcaaactgaaaataattacacgaccaggaaagc atcatcccaatatcaaagtcaagacactagagcctactcataaagaggcaaaaaagacatctcatcatccgcacaagaca aaatcttctccgcataatgtggaagcaaagcattctccgcattatcagagagaggccaaaaattctccacacctttacaa agaatcgaagagttctcccctagcatacagagaatctaaggattcaccgcatcagagagaatctaaaagttcaccacaca tatatcgtgaatcgaaagactctccgcactatagggagagcaaacactcccctcattctcatagtgcttacaaggaagct aaaagctctcctcactcacatagggacgttaaagacccgaaacactccaaacgtaagaaatcgggacagaaatcggatag aaaagatgaatttgagtttgaatctgacccagaggaggttccaccattttcttttaagtcacatcattactcctcagagg gagagagtagtgatggcactggacagagaaaacctttgacactgaaactgaaagtgaaagactccagggaaatttcacca gattag |
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Protein
| Protein ID | pfu_aug2.0_139.1_30270.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30270.t1 MTEKEEKRTLAPADERRYAIITKETIRLIAEAAGHTDITDEAAAVLGEDVSYRLRESTHMGMRDLSTNAQIVPLVPHLVT FICTEVRASSYDVSQMTKVLHMVKALVSNPYLYLEPHSCLSQLVQGVTYCLLEPLAASINPRNDHWVLRDYAAFLLAQIL NIWSSPINHIMMNTVRSMKEVLYDHTKPFCCHYGAVMGLLNLGSKTLEDILITHLPHYWPHLMAAIEDTSYSNMATKADA HKVYGAMLCDLPFRMREKFEKFHDITMQFQCFTKVRSLFVRELWEEFMEQVKIQQKLDRERMERERMQRQIDYEKRERER RLQEEHHRLMEAGKKRLEEIRQAEIAREKEEMERLEHEQRRNKKIAEQRISKMLQSDDEDDFEDEFVPYHKPKRFRQRSM VQYSEMPEDADVEMRSDISDEEQGSSASAASNVDLAVKPGQGIKLKIITRPGKHHPNIKVKTLEPTHKEAKKTSHHPHKT KSSPHNVEAKHSPHYQREAKNSPHLYKESKSSPLAYRESKDSPHQRESKSSPHIYRESKDSPHYRESKHSPHSHSAYKEA KSSPHSHRDVKDPKHSKRKKSGQKSDRKDEFEFESDPEEVPPFSFKSHHYSSEGESSDGTGQRKPLTLKLKVKDSREISP D |
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