Gene
| Gene Model ID | pfu_aug2.0_139.1_30272 |
|---|---|
| Locus | scaffold139.1 : 178946 ... 187136 : + |
| To GenomeBrowser | scaffold139.1:178946..187136 |
| Genes list of scaffold | scaffold139.1 |
| Synonym | pfu_aug1.0_16655.1_32721 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_139.1_30272.t1 | 2 | 1 | Fcf1 | 32 | 38 | 3.0e-40 | 136.3 | 0.44 | 2200.0 | -1.2 |
| pfu_aug2.0_139.1_30272.t1 | 2 | 2 | Fcf1 | 97 | 195 | 3.0e-40 | 136.3 | 6.16571e-44 | 3.0e-40 | 136.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_139.1_30272.t1 | gi|524888777|ref|XP_005100953.1| | PREDICTED: rRNA-processing protein FCF1 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_139.1_30272.t1 | gi|383865094|ref|XP_003708010.1| | 0.0 | |
| pfu_aug2.0_139.1_30272.t1 | gi|350418961|ref|XP_003492025.1| | PREDICTED: rRNA-processing protein FCF1 homolog [Bombus impatiens] | 0.0 |
| pfu_aug2.0_139.1_30272.t1 | gi|291243708|ref|XP_002741743.1| | PREDICTED: rRNA-processing protein FCF1 homolog [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_139.1_30272.t1 | gi|571506481|ref|XP_006570843.1| | PREDICTED: rRNA-processing protein FCF1 homolog [Apis mellifera] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_139.1_30272.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30272.t1 atgaatttttggtttggggaaaggggtaaagacagaagaaccaagaaatatgctgaaatgaaaaggatgattaacctaaa agacagtagaataaagaaggagcaccgccaaaaaaagaagagaaagaaggctaatccacagaacatgacagtgagggaaa taccacaggcgtcatcggccatgtttttccagtacaacacacagctaggacctccgtaccatgtcatcgtagatactaac ttcatcaacttctccatacaaaataaactggatatcatcaaatcaatgatggactgcctatatgccaaatgtattcctta cataacagattgtgtgatggctgagctggagaaattaggatctaaatatagagtggctctcagaattgcgagggacccta gatttaaaagattaccatgtatacacaaaggaacatatgctgatgactgtatagtgaagagaattactcaacacaaatgt tacattgttgcaacctgtgataaagatttaaagagaagaatcagaaagctacctggtgtacccataatgtacctaagtca acacagatactcaatagaaaggatgcctgatgcatttggtgctccaaaaacttga |
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Protein
| Protein ID | pfu_aug2.0_139.1_30272.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30272.t1 MNFWFGERGKDRRTKKYAEMKRMINLKDSRIKKEHRQKKKRKKANPQNMTVREIPQASSAMFFQYNTQLGPPYHVIVDTN FINFSIQNKLDIIKSMMDCLYAKCIPYITDCVMAELEKLGSKYRVALRIARDPRFKRLPCIHKGTYADDCIVKRITQHKC YIVATCDKDLKRRIRKLPGVPIMYLSQHRYSIERMPDAFGAPKT |
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