Gene
| Gene Model ID | pfu_aug2.0_139.1_30273 |
|---|---|
| Locus | scaffold139.1 : 189668 ... 203567 : - |
| To GenomeBrowser | scaffold139.1:189668..203567 |
| Genes list of scaffold | scaffold139.1 |
| Synonym | pfu_aug1.0_13827.1_68682 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_139.1_30273.t1 | 2 | 1 | Arf | 93 | 119 | 7.5e-17 | 61.1 | 1.5 | 1600.0 | -1.9 |
| pfu_aug2.0_139.1_30273.t1 | 2 | 2 | Arf | 137 | 259 | 7.5e-17 | 61.1 | 7.1e-20 | 7.5e-17 | 61.1 |
| pfu_aug2.0_139.1_30273.t1 | 1 | 1 | Ras | 140 | 300 | 0.0 | 221.2 | 0.0 | 0.0 | 220.8 |
| pfu_aug2.0_139.1_30273.t1 | 1 | 1 | Miro | 140 | 254 | 7.5e-22 | 78.0 | 1.6e-24 | 1.7e-21 | 76.9 |
| pfu_aug2.0_139.1_30273.t1 | 1 | 1 | Gtr1_RagA | 140 | 249 | 3.2e-06 | 26.4 | 4.3e-09 | 4.6e-06 | 25.9 |
| pfu_aug2.0_139.1_30273.t1 | 1 | 1 | SRPRB | 141 | 259 | 6.4e-06 | 25.4 | 1.2e-08 | 1.3e-05 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_139.1_30273.t1 | gi|676441927|ref|XP_009049642.1| | hypothetical protein LOTGIDRAFT_201174 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_139.1_30273.t1 | gi|524901033|ref|XP_005106931.1| | PREDICTED: ras-related protein Rab-1A-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_139.1_30273.t1 | gi|675878842|ref|XP_009024981.1| | hypothetical protein HELRODRAFT_185942 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_139.1_30273.t1 | gi|156381354|ref|XP_001632230.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_139.1_30273.t1 | gi|556956758|ref|XP_005989592.1| | PREDICTED: ras-related protein Rab-1A isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_139.1_30273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30273.t1 atggaacacacaaaacaccaaaacaaacaacagaaacaacaacaccaaataccaggagacaaacaagacaaacgaacact cacatcaacaggatcaagaaaacaacagaaaccaggtaaaacaacaccaaataccaggagacaacaagacaaaagaacac tcacaccaataggatcaagaaaacaacagaaaccaggtaaaacaacaacaccaaataccaggagacaacaagacaaacga atactcacaccaagaggatcaagaaaacaacagaaaccaggtaaaacaacaacaccaaataccaggagacaacaagacaa aggaacactcacaccaacaagatcaagaaaacaagagaaaccaaagagtgtttctcgtagtatgtcagcaatgaatccag aatatgattatctgtttaaacttttactgattggtgattccggtgtaggtaaatcctgcctgctattacggtttgcagat gacacttacacagaaagctatataagtactataggtgtagattttaaaattaggacaatagaattagatggaaaaacaat aaaattgcaaatctgggatacagccggtcaagagaggttccgaacaatcacgtccagttattacagaggtgctcatggta ttattgttgtttatgacgtcacagaccaggaatctttcaccaatgtaaagcagtggttacaggaaattgatcggtatgcc agtgaaaatgtaaataaacttttagtgggaaataagtcagacatggatatgaagaaggtggtagattacactacagcaaa ggaatttgcagacagtttaggaatcccatttctagaaacaagtgcaaagaatgctacaaatgtggaacaagcttttatga caatggctgccgagattaagaacagaatgggacccgtcacagcatcacaagacaacaaacccagtgttaaaatcaatgct agtacgcccgtcaagcaatcgggagggtgctgctaa |
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Protein
| Protein ID | pfu_aug2.0_139.1_30273.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30273.t1 MEHTKHQNKQQKQQHQIPGDKQDKRTLTSTGSRKQQKPGKTTPNTRRQQDKRTLTPIGSRKQQKPGKTTTPNTRRQQDKR ILTPRGSRKQQKPGKTTTPNTRRQQDKGTLTPTRSRKQEKPKSVSRSMSAMNPEYDYLFKLLLIGDSGVGKSCLLLRFAD DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFTNVKQWLQEIDRYA SENVNKLLVGNKSDMDMKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPVTASQDNKPSVKINA STPVKQSGGCC |
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