Gene
| Gene Model ID | pfu_aug2.0_139.1_30283 |
|---|---|
| Locus | scaffold139.1 : 388886 ... 399974 : - |
| To GenomeBrowser | scaffold139.1:388886..399974 |
| Genes list of scaffold | scaffold139.1 |
| Synonym | pfu_aug1.0_666.1_36636 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_139.1_30283.t1 | 1 | 1 | GST_N_2 | 3 | 54 | 6.9e-08 | 32.3 | 3.3e-11 | 1.2e-07 | 31.5 |
| pfu_aug2.0_139.1_30283.t1 | 1 | 1 | GST_N | 4 | 53 | 3.9e-10 | 39.7 | 1.9e-13 | 7.1e-10 | 38.9 |
| pfu_aug2.0_139.1_30283.t1 | 2 | 1 | GST_N_3 | 4 | 57 | 6.8e-10 | 39.0 | 4.9e-13 | 1.8e-09 | 37.6 |
| pfu_aug2.0_139.1_30283.t1 | 1 | 1 | VKOR | 176 | 269 | 1.8e-15 | 57.0 | 7.4e-19 | 2.8e-15 | 56.4 |
| pfu_aug2.0_139.1_30283.t1 | 2 | 2 | GST_N_3 | 266 | 283 | 6.8e-10 | 39.0 | 2.3 | 8600.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_139.1_30283.t1 | gi|260821047|ref|XP_002605845.1| | hypothetical protein BRAFLDRAFT_123804 [Branchiostoma floridae] | 2.0e-29 |
| pfu_aug2.0_139.1_30283.t1 | gi|390348808|ref|XP_003727085.1| | PREDICTED: glutathione S-transferase theta-1 isoform X1 [Strongylocentrotus purpuratus] | 5.0e-28 |
| pfu_aug2.0_139.1_30283.t1 | gi|514707851|ref|XP_005010752.1| | PREDICTED: vitamin K epoxide reductase complex subunit 1-like protein 1 [Anas platyrhynchos] | 1.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_139.1_30283.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30283.t1 atgaataacattccttttgaaggcatacaagtcgcacttcgaaacggtgagaacagacaagattggtatacaaagctgaa tcccttccagcgtgtgcctactatagatgatggtggatttgtactcactgaaagtatagcaatactaagatacctttccg agaagcacaacatcccagatcattggttcccgaggaaggacatcgtaacacaggctcggcatgatgagtatctacactgg cagcattggaacatcagacttaatggatctatggtctttcaacatttggttgttattccacgtgccactcgtagcactgt agacaggaaacaggtggaaaagttcagtaaggccacaaagtcctcagtaaatcacatcgattcctacttcctaaatggac aaacaatcaatggcacatactatgcttcactacttaccccagtttggaaaatattaaacttaagaaccacggagaactca cttgttaaaggtgtgttgttccatcaggacagtgcacctgttcacaaatggggtaaaggatttggtcttctaggatatgt gataggagagaacagtccgttaaatctacctaacagtgtctttggaatagtgttttactgcctacaaattatgtgtgcct tatctccatctcctttgctgacagagctgcagttttcgacaagtgttttgtcaaacatagcatcggtatacttggcgtac atcctatatttcatccttgatgacttttgtgtggtgtgtgtgtccacctacatcactaacgctttattatttgtttttat ttatctcaaaagacaggcagtcaaaactagacaaatctcaaaacagaatgctgacagaaagaaaaaggcaaactga |
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Protein
| Protein ID | pfu_aug2.0_139.1_30283.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_139.1_30283.t1 MNNIPFEGIQVALRNGENRQDWYTKLNPFQRVPTIDDGGFVLTESIAILRYLSEKHNIPDHWFPRKDIVTQARHDEYLHW QHWNIRLNGSMVFQHLVVIPRATRSTVDRKQVEKFSKATKSSVNHIDSYFLNGQTINGTYYASLLTPVWKILNLRTTENS LVKGVLFHQDSAPVHKWGKGFGLLGYVIGENSPLNLPNSVFGIVFYCLQIMCALSPSPLLTELQFSTSVLSNIASVYLAY ILYFILDDFCVVCVSTYITNALLFVFIYLKRQAVKTRQISKQNADRKKKAN |
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