Gene
| Gene Model ID | pfu_aug2.0_1394.1_15012 |
|---|---|
| Locus | scaffold1394.1 : 108036 ... 109955 : + |
| To GenomeBrowser | scaffold1394.1:108036..109955 |
| Genes list of scaffold | scaffold1394.1 |
| Synonym | pfu_aug1.0_14176.1_61316 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1394.1_15012.t1 | 6 | 1 | zf-B_box | 17 | 60 | 3.4e-11 | 42.8 | 6.9e-09 | 5.1e-05 | 23.0 |
| pfu_aug2.0_1394.1_15012.t1 | 6 | 2 | zf-B_box | 73 | 110 | 3.4e-11 | 42.8 | 2.7e-12 | 2.0e-08 | 33.9 |
| pfu_aug2.0_1394.1_15012.t1 | 6 | 3 | zf-B_box | 399 | 403 | 3.4e-11 | 42.8 | 0.41 | 3000.0 | -1.9 |
| pfu_aug2.0_1394.1_15012.t1 | 6 | 4 | zf-B_box | 440 | 449 | 3.4e-11 | 42.8 | 1.4 | 10000.0 | -3.6 |
| pfu_aug2.0_1394.1_15012.t1 | 6 | 5 | zf-B_box | 491 | 499 | 3.4e-11 | 42.8 | 0.41 | 3000.0 | -1.8 |
| pfu_aug2.0_1394.1_15012.t1 | 6 | 6 | zf-B_box | 535 | 541 | 3.4e-11 | 42.8 | 0.6 | 4400.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1394.1_15012.t1 | gi|390360650|ref|XP_003729738.1| | 1.0e-09 | |
| pfu_aug2.0_1394.1_15012.t1 | gi|736207365|ref|XP_010776213.1| | PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM69-like [Notothenia coriiceps] | 2.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_1394.1_15012.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1394.1_15012.t1 atggcgtttgcctcttcaaggataggagcacaggaagctttaatcaaaccttgcgatttatgtgacgatgacgaggatgt gaattggttctgcaaagactgtgtcaaaaatttatgtgaaagatgtaaaagaggtcatctcaaaatcgccatttgcaaaa atcataacgtagtttcgattttggaggggatttccattacaaagggaaatgtctcaaatatgtgcccagatcatgatata ccgttttccttcttttgtcgaacgtgtgataacatagtctgttccaaatgcatcgcaaagatccatagcaaacacgactt tgttgatattcacgagttccaatccgaattgcagagtaaagttgattacattttaaaagaaaaggaggaggaagaagaac aaattaaaaagaatatagaagtatttgcagaatatgaaagcgaatgtggtaaccttttggaacagaactgtgctgttgtt gataggagagtgaaagctattcaattagctgttgccgaagagggcgaggaactgaagagaattctaaaaacttcttcaga tgaacatgtgaaaaaagccctggaaggtagacaaaaacttgaggcaaagaaacatgtttaccatgaggagattcaaacag taaaacaaagccttccattacaagctgctccaactttcaatcagttcttcaacacatctatttcaacacttcagtctcta aggccgttgtcactttcaatccccaaaagcaacaaatttacagttggcgacattcacatagagcacatcaaggatatgat tggcaaagtcgaaatagaaagggtgcatgagactgtacccaaatcaacaagaaacactgaaaacaaaggaaaatttaccc tttcaaagtctagaattgtaagcatgtatgaattaaaagttcaaactagctgctacagtttgagtaccagtcctgatgga aatatctggcttggtggtagaggttgtgtgtacaagatgagctcggattgttctacgatcatacatcgaatacctgcttt agagtcttactttatctgcaaccatatggactgcttacaatcaggagattcagttatgtcatatgatgggggacagagca aaatagacagattcacctctgatgggagaagattaaaattcacaaacttgtcgccaaaatacacacgcaagatatgtgta acatgtcatgacaaagttgtggtgaatgctgcatatcacccccttttgttttcgccatcattcttcctgttggtattctc caaggaaggaaatatgcttcaggaaattaaaagggacaaagagattgcaagcttctgtattgatgacagaggaaatatta tcatctcagaaaagggattttcaaattcacttactgtaataaatatggagggatctgtcctgaagaatatcaaagtaaac tgtataaaaaatgccaaagccaatgtacggagaatgacatgtgataggcatggaaacatactaatactcatacaagacga aaagcaagtgtatctgatcagtggtgatggaaaggttgagcaagtctttacagtgctacaatgtgcaagaaagataaatg atatctgcattgactgtgaaaaccggcttctaatattggtggattatgcaaaagtaattatcatcaattatttagagtaa |
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Protein
| Protein ID | pfu_aug2.0_1394.1_15012.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1394.1_15012.t1 MAFASSRIGAQEALIKPCDLCDDDEDVNWFCKDCVKNLCERCKRGHLKIAICKNHNVVSILEGISITKGNVSNMCPDHDI PFSFFCRTCDNIVCSKCIAKIHSKHDFVDIHEFQSELQSKVDYILKEKEEEEEQIKKNIEVFAEYESECGNLLEQNCAVV DRRVKAIQLAVAEEGEELKRILKTSSDEHVKKALEGRQKLEAKKHVYHEEIQTVKQSLPLQAAPTFNQFFNTSISTLQSL RPLSLSIPKSNKFTVGDIHIEHIKDMIGKVEIERVHETVPKSTRNTENKGKFTLSKSRIVSMYELKVQTSCYSLSTSPDG NIWLGGRGCVYKMSSDCSTIIHRIPALESYFICNHMDCLQSGDSVMSYDGGQSKIDRFTSDGRRLKFTNLSPKYTRKICV TCHDKVVVNAAYHPLLFSPSFFLLVFSKEGNMLQEIKRDKEIASFCIDDRGNIIISEKGFSNSLTVINMEGSVLKNIKVN CIKNAKANVRRMTCDRHGNILILIQDEKQVYLISGDGKVEQVFTVLQCARKINDICIDCENRLLILVDYAKVIIINYLE |
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