Gene
| Gene Model ID | pfu_aug2.0_1394.1_15013 |
|---|---|
| Locus | scaffold1394.1 : 110661 ... 122585 : - |
| To GenomeBrowser | scaffold1394.1:110661..122585 |
| Genes list of scaffold | scaffold1394.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1394.1_15013.t1 | 2 | 1 | TAF1_subA | 82 | 177 | 2.9e-18 | 65.6 | 6.6e-09 | 9.7e-05 | 21.0 |
| pfu_aug2.0_1394.1_15013.t1 | 2 | 2 | TAF1_subA | 211 | 302 | 2.9e-18 | 65.6 | 9.6e-17 | 1.4e-12 | 46.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1394.1_15013.t1 | gi|585712069|ref|XP_006824851.1| | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit A-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1394.1_15013.t1 | gi|524868819|ref|XP_005091209.1| | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit A-like isoform X2 [Aplysia californica] | 7.0e-33 |
| pfu_aug2.0_1394.1_15013.t1 | gi|524868817|ref|XP_005091208.1| | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit A-like isoform X1 [Aplysia californica] | 8.0e-33 |
| pfu_aug2.0_1394.1_15013.t1 | gi|554543931|ref|XP_005866566.1| | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit A [Myotis brandtii] | 2.0e-31 |
| pfu_aug2.0_1394.1_15013.t1 | gi|558193122|ref|XP_006103772.1| | PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit A [Myotis lucifugus] | 2.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_1394.1_15013.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1394.1_15013.t1 atgacgnaacaggctaccttagaggtgatgtaccaggaacctagggacaacaaggagattgttgatcagtttgtcaagac catactatatcatgaccagtcagattgctgtatggtacctaagaaaaaaggaaccatagtcccgacagatgacagtttat atctagataatgtatttaaggcttacaaggggctggtgtggtacatagaatggagggcagctaaggagaaagcagaagtc atggattctcagatggatttggatatccttctctcaagtcagcagtcagcatctacaaactttgaagaagtgatgaaaac acacgcacagaaagccttggcagcatttgccgatcttgtcgacaaagagggagtctgggacatcttcattacaaaacata ctgaactgttggagtattatgacaaaggagaggaagccaggcatgttttggaaaattacagagataaaaatccggaaaat ccaaactcccacaagtatctgtatgaatatatctgtaggcacggagcttctgaccaggaaaaaataaaagtcctcaaggg acttgctaatcgtgttccttctgattccttagttatggagctctgtctactactgctgaaagagggagaacatgtacaga cactgtatcgtatctgtgatctattagactatgaggctttcatgaccgaggagaaaccatggcagatcatggtgtcttct ctaacggaattgcccgacagatcctgtgtagatgagatttggcagaccagagaagattggtggccagaatatcacttctc tcctgataacacacgttgtacaagcacacctgtgtctgagctatgtgtgtgtaaagccatgtgtgcagagttgttcatcg gaaaagaaaattcatttacaaagaaagttaaatcgctaatggatgaaaagcagagagatggatatattaaacggaaccaa aaattactaaaaatagaaaatgtgacaacatga |
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Protein
| Protein ID | pfu_aug2.0_1394.1_15013.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1394.1_15013.t1 MTXQATLEVMYQEPRDNKEIVDQFVKTILYHDQSDCCMVPKKKGTIVPTDDSLYLDNVFKAYKGLVWYIEWRAAKEKAEV MDSQMDLDILLSSQQSASTNFEEVMKTHAQKALAAFADLVDKEGVWDIFITKHTELLEYYDKGEEARHVLENYRDKNPEN PNSHKYLYEYICRHGASDQEKIKVLKGLANRVPSDSLVMELCLLLLKEGEHVQTLYRICDLLDYEAFMTEEKPWQIMVSS LTELPDRSCVDEIWQTREDWWPEYHFSPDNTRCTSTPVSELCVCKAMCAELFIGKENSFTKKVKSLMDEKQRDGYIKRNQ KLLKIENVTT |
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