Gene
| Gene Model ID | pfu_aug2.0_1398.1_28259 |
|---|---|
| Locus | scaffold1398.1 : 30893 ... 49715 : - |
| To GenomeBrowser | scaffold1398.1:30893..49715 |
| Genes list of scaffold | scaffold1398.1 |
| Synonym | pfu_aug1.0_2954.1_44535 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1398.1_28259.t1 | 5 | 1 | WD40 | 201 | 214 | 2.0e-09 | 36.9 | 0.14 | 710.0 | 0.3 |
| pfu_aug2.0_1398.1_28259.t1 | 5 | 2 | WD40 | 238 | 263 | 2.0e-09 | 36.9 | 2.3e-05 | 0.11 | 12.3 |
| pfu_aug2.0_1398.1_28259.t1 | 5 | 3 | WD40 | 333 | 341 | 2.0e-09 | 36.9 | 2.3 | 11000.0 | -3.5 |
| pfu_aug2.0_1398.1_28259.t1 | 5 | 4 | WD40 | 367 | 394 | 2.0e-09 | 36.9 | 9.8e-06 | 0.048 | 13.5 |
| pfu_aug2.0_1398.1_28259.t1 | 5 | 5 | WD40 | 413 | 428 | 2.0e-09 | 36.9 | 0.01 | 50.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1398.1_28259.t1 | gi|585706323|ref|XP_002740511.2| | PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1398.1_28259.t1 | gi|676449046|ref|XP_009051928.1| | hypothetical protein LOTGIDRAFT_114808, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1398.1_28259.t1 | gi|390360142|ref|XP_784892.2| | 0.0 | |
| pfu_aug2.0_1398.1_28259.t1 | gi|530637951|ref|XP_005305793.1| | PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_1398.1_28259.t1 | gi|530637949|ref|XP_005305792.1| | PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1398.1_28259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1398.1_28259.t1 atgcagagagattccctgtttggatttcatatcaaagaaacgagacaagatcacggaatatcagaccagctatcggcata ccatttcaacaagatccaagcgttttcccgatccctcgtgagagaactgaaaatgttgagaagaaaagtagaaacgacag acaggacagctgaaaaaatttcatcaaaagcaaaaataagacggaagaaaagatcttctgacgatttccgtccacttggg gagaagagatcacaccaagatgacgaagaaaagaaactcgaatctcttgtattgggaggagcagatgatgtgatagaagt attggaaaatcagaccttgaacaaagatgaattggagaaacgatctgcagagaaacagaagaaacctgcctgggaagatg aagatgatgtcaaagggagtattgagataaccacagacaggagatatgagggtttacgacaaggggaagagtgtagaatt aggacggaccaatacaccacacgacttaaaaataaattccagaacatgtcttcaacgccgaactgggccaaacttccctc agaaaggaaaccagaatctgacgaggacagcgatgtagatgatctcatgcagaaaacgggaaactacatagctacgtcaa gttctcttcctaaaggcattcttaacttcaaacaatgtaaagatgcaaacaaggagagcaccgcccaaggtaaactcaca tcagtagaatttcatccgagttcacaagtcttactaactgcagggtttaatcaaaccctatcacttttccaggttgacgg aaaaaacaatcccaaaatccagagtattttcatagaaaatttccccatacatacagctcatttcagtgctaacggagagg aggttgtcatggggtccaaacataaaagtttctactacttcgatatgatggcaggaaaaatgattaatgtcccttggatt aaaggtatagaagaaacaaacatgaagagatttaaagtatcaccagacggtagattcctagtgttcttagggagatatgg tgcaatgcatctcatttctgctcagtcaaaagagtggatagatacgttacgtatgaacggcaacgtacaagccgtggcat tctccagggacggcagtaagatgtactcacatggagatgatggagaggtttttgtatgggatatgagtactcggcagtgt atacatcatttctacgacgagggttgtatacagggtaccgctatagccgcttcaccaaacaaccaatatctggcctgtgg tgccacatctgagactaaagtaaaaatcaaaggtctgaaggccctgaaagatactccactctcgtaa |
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Protein
| Protein ID | pfu_aug2.0_1398.1_28259.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1398.1_28259.t1 MQRDSLFGFHIKETRQDHGISDQLSAYHFNKIQAFSRSLVRELKMLRRKVETTDRTAEKISSKAKIRRKKRSSDDFRPLG EKRSHQDDEEKKLESLVLGGADDVIEVLENQTLNKDELEKRSAEKQKKPAWEDEDDVKGSIEITTDRRYEGLRQGEECRI RTDQYTTRLKNKFQNMSSTPNWAKLPSERKPESDEDSDVDDLMQKTGNYIATSSSLPKGILNFKQCKDANKESTAQGKLT SVEFHPSSQVLLTAGFNQTLSLFQVDGKNNPKIQSIFIENFPIHTAHFSANGEEVVMGSKHKSFYYFDMMAGKMINVPWI KGIEETNMKRFKVSPDGRFLVFLGRYGAMHLISAQSKEWIDTLRMNGNVQAVAFSRDGSKMYSHGDDGEVFVWDMSTRQC IHHFYDEGCIQGTAIAASPNNQYLACGATSETKVKIKGLKALKDTPLS |
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