Gene
| Gene Model ID | pfu_aug2.0_1398.1_28260 |
|---|---|
| Locus | scaffold1398.1 : 53400 ... 65455 : - |
| To GenomeBrowser | scaffold1398.1:53400..65455 |
| Genes list of scaffold | scaffold1398.1 |
| Synonym | pfu_aug1.0_2954.1_44536 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1398.1_28260.t1 | 2 | 1 | GatB_N | 12 | 162 | 0.0 | 277.2 | 0.0 | 0.0 | 164.8 |
| pfu_aug2.0_1398.1_28260.t1 | 2 | 2 | GatB_N | 161 | 257 | 0.0 | 277.2 | 2.6e-36 | 1.9e-32 | 112.2 |
| pfu_aug2.0_1398.1_28260.t1 | 1 | 1 | GatB_Yqey | 313 | 461 | 7.0e-24 | 84.2 | 1.6e-27 | 1.2e-23 | 83.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1398.1_28260.t1 | gi|514474453|ref|XP_005006846.1| | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial isoform X2 [Cavia porcellus] | 0.0 |
| pfu_aug2.0_1398.1_28260.t1 | gi|674089044|ref|XP_008852478.1| | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial isoform X2 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_1398.1_28260.t1 | gi|109075901|ref|XP_001083846.1| | PREDICTED: probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial isoform 2 [Macaca mulatta] | 0.0 |
| pfu_aug2.0_1398.1_28260.t1 | gi|731224227|ref|XP_010626217.1| | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial isoform X2 [Fukomys damarensis] | 0.0 |
| pfu_aug2.0_1398.1_28260.t1 | gi|545688008|ref|NP_001271014.1| | uncharacterized protein LOC101866373 [Macaca fascicularis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1398.1_28260.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1398.1_28260.t1 atgaaatagaaagagaaaagaggcaaatggaaaccagtaattggactcgagatacatgcacagatcaagactgatagtaa attattctcccgatcagggacatcgttcagtacacctgttaattgccaagtctcattttttgacgcagccctccctggca cattaccggtactgaacaggtcttgtgtagaggctggagtcaggacagctttagctttgaagagtaacatcaacaaagtg tccaaatttgacaggaaacactacttttatgccgatcttccacaaggctatcagataacacaacagagaatgccacttgc tgtcggaggaaaagtggactacgcaatcgttgatgaaagtacgcagaaagagattgggcaagggacggcaagaatcacac aaatacagctggagcaagatagcggcaaaagtcttcatgacgaagaagaaaaacggagcttgatagatctcaacagagct gagggagcattgagggtagatgccaatatatccgtacaccaagagggggagccacttggaacaagaacagaagtcaagaa catcggcaatatcaaggccattaaagcggcagtagattacgagatacaacgacagatagctatattggaggaaggcggta caatagaaaacgaaaccaggagctatgatggattgacagggacaacgttacccatgcgtgacaaggaattaaagatggac tatagatttatgccggagcctaatttaccgcctgtgcgactttatgactcggaaaccattagtaaagtggcagacccttc cagtgttatagatattgataaatttagaagctccattccacccttaccgaaacaagtgaaagaaaacttgcagaaagaat acaaaatttcgctgtttcaagctaatatgctatttggcatcgtgggattgtacgatcttttccaagacatactagagcag ccaaacaagaatctgtatagagttttaaatttccttcttcatgacctacatggagcatataaaaccagaaacatgtcatt cgaagatgggccaatgacactagaacatgctgcagaattaatagatatgatagaagaaaaagtcaccaatcatgccttgg ctaagaagattttagttgaatatatagatgggaatgaaagaatatcaccacgtataatagcagaaaagaaaaacctaacc atgattaatgatacagaaattctaactgaagcttgtaaaaaatcgatggataaaaatccagcattggtaaaaacatacag taaaggcaaagttggtgctataaaagccttgataggggacgccatggaattcactgataatcgtgctagtaggattgtca ttacggaaataatggaatctttgctaccccaagtggaaaagaaaaaacggaaagaaaaaaagttaaaagattga |
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Protein
| Protein ID | pfu_aug2.0_1398.1_28260.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1398.1_28260.t1 MKXKEKRGKWKPVIGLEIHAQIKTDSKLFSRSGTSFSTPVNCQVSFFDAALPGTLPVLNRSCVEAGVRTALALKSNINKV SKFDRKHYFYADLPQGYQITQQRMPLAVGGKVDYAIVDESTQKEIGQGTARITQIQLEQDSGKSLHDEEEKRSLIDLNRA EGALRVDANISVHQEGEPLGTRTEVKNIGNIKAIKAAVDYEIQRQIAILEEGGTIENETRSYDGLTGTTLPMRDKELKMD YRFMPEPNLPPVRLYDSETISKVADPSSVIDIDKFRSSIPPLPKQVKENLQKEYKISLFQANMLFGIVGLYDLFQDILEQ PNKNLYRVLNFLLHDLHGAYKTRNMSFEDGPMTLEHAAELIDMIEEKVTNHALAKKILVEYIDGNERISPRIIAEKKNLT MINDTEILTEACKKSMDKNPALVKTYSKGKVGAIKALIGDAMEFTDNRASRIVITEIMESLLPQVEKKKRKEKKLKD |
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