Gene
| Gene Model ID | pfu_aug2.0_14.1_13372 |
|---|---|
| Locus | scaffold14.1 : 135696 ... 143569 : + |
| To GenomeBrowser | scaffold14.1:135696..143569 |
| Genes list of scaffold | scaffold14.1 |
| Synonym | pfu_aug1.0_15470.1_39700 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| double-strand break repair protein mre11a isoform x1 | GO:0004519 GO:0004527 GO:0005634 GO:0006302 GO:0022402 GO:0030145 GO:0044427 GO:0045786 GO:0051276 GO:0051321 GO:0090305 GO:1902589 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_14.1_13372.t1 | 1 | 1 | Metallophos | 10 | 246 | 4.9e-27 | 94.6 | 1.6e-30 | 7.7e-27 | 93.9 |
| pfu_aug2.0_14.1_13372.t1 | 1 | 1 | Metallophos_2 | 10 | 270 | 1.4e-06 | 28.2 | 7.9e-10 | 3.9e-06 | 26.7 |
| pfu_aug2.0_14.1_13372.t1 | 3 | 1 | Mre11_DNA_bind | 291 | 434 | 0.0 | 183.4 | 5.29971e-42 | 2.6e-38 | 131.6 |
| pfu_aug2.0_14.1_13372.t1 | 3 | 2 | Mre11_DNA_bind | 459 | 540 | 0.0 | 183.4 | 4.8e-19 | 2.4e-15 | 56.8 |
| pfu_aug2.0_14.1_13372.t1 | 3 | 3 | Mre11_DNA_bind | 584 | 611 | 0.0 | 183.4 | 0.055 | 270.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_14.1_13372.t1 | gi|676490083|ref|XP_009065154.1| | hypothetical protein LOTGIDRAFT_108504 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_14.1_13372.t1 | gi|524866860|ref|XP_005090246.1| | PREDICTED: double-strand break repair protein MRE11A-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_14.1_13372.t1 | gi|675871466|ref|XP_009021293.1| | hypothetical protein HELRODRAFT_192564 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_14.1_13372.t1 | gi|390344720|ref|XP_798167.3| | 0.0 | |
| pfu_aug2.0_14.1_13372.t1 | gi|73987751|ref|XP_542244.2| | PREDICTED: double-strand break repair protein MRE11A isoformX2 [Canis lupus familiaris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_14.1_13372.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14.1_13372.t1 atgcctggttcagaaaatgacaacacacttaagattctggttgccactgacaaccatcttggatatggagaaaaggatca aatcaggggaaatgactccttggtgacttttgaagaaattctggagaatgcaaaaaagcatgaggttgatttcattttgt taggaggggatctattccatgagaataaacccccacgaaggattttacacggttgtatcgctttgttaagaacttactgt atgggagaaaagcctgtccagtttgaatatttaagtgaccaatcattagattttaagcactgtcagtttccaactctcaa ctatgaggatccaaatcttaacatttcaataccagtattttccatacatggtaaccatgacgatccaacaggtcaaggta acttgtgctcactggacttgttacatagtgccggattagtcaattattttggtaaaactacaaatttagagaaaattgaa atttcaccactactgcttcaaaaaggaagtacaaagttagcattgtatggaatgggatctataagagacgaaagacttca cagaatgtttgttcataaaaatgttacaatgcttcggccaagggaagaaaaagaggactggtttaatctatttgtgattc atcaaaacagatcaaagcattctgcaacgagccatataccggaacaattccttgatgacttcttagatttggtgatttgg ggacacgagcatgaatgtcgtatagaaccagagtggaacggtacccagaatttctatgtgtcacagccaggaagtagcgt agccacatctctttgtgaaggagaggctggtaagaaacatgttggtctcctgcagattcgtggcaaagacttcaaaatga caaaaatcccgcttaatacggtacgtcagttttacatggaggatgtcgtactgacagacacgtcgctggatcccactgac cataacatcgccaagcaggtggaggcgttctgtcttgagaaagtggaggccattctagagaaagcagctctggaacacac aggaaatcgtaaacagcctgataaacccctgatacgtttgaggatagattacagtggaggattcgaagccttcaatgcaa atagatttggacagaagtttgttgatagagttgccaatccaaaagacatgatatttttcactcgacggaaaattaccaaa gtaaaacctgaagaggagatggtacctgctgatacagatataagaatggtgaatctagatgcatcccgagtggaggacat ggtcagggatatcttctccaaatctgatgaggctcggcctccttctgcgatagtttgtcttagtgaatttatgaaccaaa tgcattactcattgacatttggacagaagtttgttgatagagtagccaatccaaaagacatgatatttttcactcgacgg aaaattaccaaagtaaaacctgaagaggagatggtacctgctgatacagatattagaatggtgaatctagatgcatcccg agttgaggacatggtcagggatatcttctccaaatctgatgagaactaccagcttagattactgacagagaaaggtatgg gcgatgctgtacaggagtatgtggacaaagaggaaagagatgccattgatgaattagtcaaatatcagctggaaaagacc caggactacctgaagaaaaggaatacaggtgaggatataatagagaaggaagtgagccgctacaaagaggaacgcaagaa aaaacgagaggacgaagcagaggtaaaggaggccataaaacgagctcagacaaaaactgcctcgcagacgggtagttacc gtgacaatgacgatagccccaacaatgactcagacgggagtgagctgccagacatgtcaacacgaggcagagggagaggt agggggagggggaggggcagtagaggaggcagcaccagtgaggggaggggaaggggtggtaggggatccagaggtggacg aggatcaaggggtggaaagaacaaagatccagttgtgccatcatctaatagcactattatggacgctttctcctcacaga ggtcaaggcaggcatcagggaggtcaaaggcatctaaaagctacatagaatctgatgatgatgatgtcattcctattgac gatgatccatttgacgtaccttcttcagcacgcaagtctaaatcatctcctgcatcaaacagtagagcttcaaagtccac cagtaaaaaacgaggggtcaattttgactcggattctgatgatgacctatatccaactaagaggagaagatga |
|
Protein
| Protein ID | pfu_aug2.0_14.1_13372.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14.1_13372.t1 MPGSENDNTLKILVATDNHLGYGEKDQIRGNDSLVTFEEILENAKKHEVDFILLGGDLFHENKPPRRILHGCIALLRTYC MGEKPVQFEYLSDQSLDFKHCQFPTLNYEDPNLNISIPVFSIHGNHDDPTGQGNLCSLDLLHSAGLVNYFGKTTNLEKIE ISPLLLQKGSTKLALYGMGSIRDERLHRMFVHKNVTMLRPREEKEDWFNLFVIHQNRSKHSATSHIPEQFLDDFLDLVIW GHEHECRIEPEWNGTQNFYVSQPGSSVATSLCEGEAGKKHVGLLQIRGKDFKMTKIPLNTVRQFYMEDVVLTDTSLDPTD HNIAKQVEAFCLEKVEAILEKAALEHTGNRKQPDKPLIRLRIDYSGGFEAFNANRFGQKFVDRVANPKDMIFFTRRKITK VKPEEEMVPADTDIRMVNLDASRVEDMVRDIFSKSDEARPPSAIVCLSEFMNQMHYSLTFGQKFVDRVANPKDMIFFTRR KITKVKPEEEMVPADTDIRMVNLDASRVEDMVRDIFSKSDENYQLRLLTEKGMGDAVQEYVDKEERDAIDELVKYQLEKT QDYLKKRNTGEDIIEKEVSRYKEERKKKREDEAEVKEAIKRAQTKTASQTGSYRDNDDSPNNDSDGSELPDMSTRGRGRG RGRGRGSRGGSTSEGRGRGGRGSRGGRGSRGGKNKDPVVPSSNSTIMDAFSSQRSRQASGRSKASKSYIESDDDDVIPID DDPFDVPSSARKSKSSPASNSRASKSTSKKRGVNFDSDSDDDLYPTKRRR |
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