Gene
| Gene Model ID | pfu_aug2.0_14.1_13389 |
|---|---|
| Locus | scaffold14.1 : 398411 ... 400890 : + |
| To GenomeBrowser | scaffold14.1:398411..400890 |
| Genes list of scaffold | scaffold14.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| histone deacetylase rpd3 | GO:0000122 GO:0000278 GO:0000792 GO:0000978 GO:0000980 GO:0001047 GO:0001103 GO:0001106 GO:0003700 GO:0005657 GO:0005667 GO:0005829 GO:0006344 GO:0006367 GO:0007179 GO:0007219 GO:0007596 GO:0008284 GO:0009913 GO:0010832 GO:0010870 GO:0010977 GO:0016358 GO:0016580 GO:0016581 GO:0021766 GO:0031492 GO:0032041 GO:0032922 GO:0033613 GO:0035098 GO:0035851 GO:0042475 GO:0042733 GO:0042826 GO:0043044 GO:0043433 GO:0043922 GO:0044822 GO:0045786 GO:0045862 GO:0045944 GO:0046969 GO:0046970 GO:0047485 GO:0048011 GO:0048714 GO:0051059 GO:0051091 GO:0051896 GO:0055013 GO:0060044 GO:0060297 GO:0060766 GO:0060789 GO:0061029 GO:0061198 GO:0061647 GO:0070932 GO:0070933 GO:0090090 GO:0090311 GO:0097372 GO:2001243 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_14.1_13389.t1 | 1 | 1 | Hist_deacetyl | 10 | 106 | 3.2e-11 | 43.1 | 2.5e-15 | 3.8e-11 | 42.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_14.1_13389.t1 | gi|170070248|ref|XP_001869513.1| | histone deacetylase [Culex quinquefasciatus] | 0.0 |
| pfu_aug2.0_14.1_13389.t1 | gi|195167966|ref|XP_002024803.1| | GL17910 [Drosophila persimilis] | 0.0 |
| pfu_aug2.0_14.1_13389.t1 | gi|524887781|ref|XP_005100474.1| | PREDICTED: histone deacetylase 2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_14.1_13389.t1 | gi|524959473|ref|XP_005079687.1| | PREDICTED: histone deacetylase 1 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_14.1_13389.t1 | gi|524887783|ref|XP_005100475.1| | PREDICTED: histone deacetylase 2-like isoform X2 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_14.1_13389.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14.1_13389.t1 atgagtgatattggaaactattattatggacagggacatcccatgaaaccacacagaatacgtatgacacacaaccttat actgaactatggtctctacagaaaaatggaaatttatcggccacacaaagctacccaggaggagatgaccaaattccaca gtgatgattacatcaagtttttacggagtatacgaccagacaatatgtcagattacaataaacagatgcagagattcaat gtcggagaggactgtcctgtgtttgacggcatgtatgagttttgtcagctctctacaggtggctctgttgctagctggag ctgtcaagttaaacaaacaagcggcagacattgcagtaaactgggccggtggacttcaccatgccaagaaatcagaagct tcgggattctgctatgtaaatga |
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Protein
| Protein ID | pfu_aug2.0_14.1_13389.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14.1_13389.t1 MSDIGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKATQEEMTKFHSDDYIKFLRSIRPDNMSDYNKQMQRFN VGEDCPVFDGMYEFCQLSTGGSVASWSCQVKQTSGRHCSKLGRWTSPCQEIRSFGILLCK |
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