Gene
| Gene Model ID | pfu_aug2.0_14.1_13390 |
|---|---|
| Locus | scaffold14.1 : 401331 ... 405474 : + |
| To GenomeBrowser | scaffold14.1:401331..405474 |
| Genes list of scaffold | scaffold14.1 |
| Synonym | pfu_aug1.0_1064.1_15330 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| histone deacetylase 1 | GO:0000118 GO:0005737 GO:0006355 GO:0008134 GO:0032041 GO:0046969 GO:0046970 GO:0061647 GO:0070932 GO:0070933 GO:0097372 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_14.1_13390.t1 | 1 | 1 | Hist_deacetyl | 1 | 125 | 2.7e-30 | 105.7 | 2.9e-34 | 4.3e-30 | 105.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_14.1_13390.t1 | gi|260799294|ref|XP_002594632.1| | hypothetical protein BRAFLDRAFT_217516 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_14.1_13390.t1 | gi|676463904|ref|XP_009056751.1| | hypothetical protein LOTGIDRAFT_178649 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_14.1_13390.t1 | gi|148229549|ref|NP_001079396.1| | histone deacetylase 1 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_14.1_13390.t1 | gi|241626601|ref|XP_002407932.1| | histone deacetylase 1, 2 ,3, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_14.1_13390.t1 | gi|47551069|ref|NP_999711.1| | histone deacetylase 1 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_14.1_13390.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14.1_13390.t1 atgacagtatcattccacaaatacggagaatattttccgggtaccggagatctcagggacattggtgctgggaaaggaaa gtactacgcagtgaattttccattaagagatggtattgatgatgagtcatatgaatcaatatttaaaccagtaatgacca aagtgatggagatgtaccagcccagtgctatagtactacaatgtggagctgattcattgtctggggacaggctcggctgc tttaatctgacactcaaaggtcatggtaaggcggtagagtttatgaagaagtggaacctacctctcctacttctaggtgg tgggggttatacaatcagaaatgtggccagatgctggacatttgaaacctcaatagctctcggagtagatatagcaaacg agttaccatacaatgactactttgaatattacggtcccgacttcaaacttcacatcagtccctcaaatatggccaatcag aatacaggagaatacatggaaaaaatcaaaacaaggttgtttgaaaatctccgaatgttaccccatgctcctggtgttca gatgtcagctataccagaggacgcattgaacaatgaagatgatgaagaagatgaggataagaatccagatgaaagaatct caatccgtgccagtgacaagaggataacaggggaagaagaatactccgatagtgaagatgaaggtgagggaggacgtaaa gatcgggctagctacagacctaaagctaaaagaatgaagacagaagcaggggaaacaaagaaggagaccacagcagaaaa agatgaatcaaagaaagatgagaaagaacctaagaaggaacctatagaatcaaaagatgaaaataaatctgcctcagcag aaaagactgaagagaaaccagaatctgcagagaaaaaagtatcatctaccccagctaccactgctaaggagtctgcacct acagaggccaaagaaggtgaaactgttaatggtgctcagaagatggagcattga |
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Protein
| Protein ID | pfu_aug2.0_14.1_13390.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14.1_13390.t1 MTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYESIFKPVMTKVMEMYQPSAIVLQCGADSLSGDRLGC FNLTLKGHGKAVEFMKKWNLPLLLLGGGGYTIRNVARCWTFETSIALGVDIANELPYNDYFEYYGPDFKLHISPSNMANQ NTGEYMEKIKTRLFENLRMLPHAPGVQMSAIPEDALNNEDDEEDEDKNPDERISIRASDKRITGEEEYSDSEDEGEGGRK DRASYRPKAKRMKTEAGETKKETTAEKDESKKDEKEPKKEPIESKDENKSASAEKTEEKPESAEKKVSSTPATTAKESAP TEAKEGETVNGAQKMEH |
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