Gene
| Gene Model ID | pfu_aug2.0_1410.1_01606 |
|---|---|
| Locus | scaffold1410.1 : 7470 ... 13025 : - |
| To GenomeBrowser | scaffold1410.1:7470..13025 |
| Genes list of scaffold | scaffold1410.1 |
| Synonym | pfu_aug1.0_6216.1_16878 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| zinc knuckle protein | GO:0003824 GO:0043170 GO:0044238 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1410.1_01606.t1 | 2 | 1 | RVT_1 | 23 | 177 | 1.8e-16 | 60.1 | 4.0e-16 | 3.0e-12 | 46.3 |
| pfu_aug2.0_1410.1_01606.t1 | 3 | 1 | Spuma_A9PTase | 203 | 242 | 1.9e-06 | 27.9 | 1.8 | 14000.0 | -4.2 |
| pfu_aug2.0_1410.1_01606.t1 | 3 | 2 | Spuma_A9PTase | 368 | 429 | 1.9e-06 | 27.9 | 8.2e-10 | 6.1e-06 | 26.2 |
| pfu_aug2.0_1410.1_01606.t1 | 3 | 3 | Spuma_A9PTase | 441 | 460 | 1.9e-06 | 27.9 | 0.91 | 6700.0 | -3.2 |
| pfu_aug2.0_1410.1_01606.t1 | 2 | 2 | RVT_1 | 488 | 510 | 1.8e-16 | 60.1 | 0.00011 | 0.79 | 9.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1410.1_01606.t1 | gi|339257752|ref|XP_003369062.1| | zinc knuckle protein [Trichinella spiralis] | 0.0 |
| pfu_aug2.0_1410.1_01606.t1 | gi|410929869|ref|XP_003978321.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1410.1_01606.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1410.1_01606.t1 atgctcaaagcagatgtgatagagccatctatgtcagagtgggcatcgtcgcccgtgctcgagaggaaacgtgacggtag tgtgagatggtgcgtcgattaccgagctctcaacaaggtaattaagaaagacatattccaattgccattggtggaggaat gcatggattccttgtcaggtaatctctggtactcaaaattagatgccacatggggatattggcaaattaaagtcaaagat gaagacaagtgtaaaacagccttcactactaaatacggcttgtaccatttaaggaggatgagctttgtaacgaacgcgcc aagcacattttcgagagtgatgaatcttgttttacgaggtttgcattggaggacagtttttgcctttcttggtgatgttt tggttctcggtaagtcttttgatgatcacgtcgagaacttagcggaagtattctacagatgtagggaatatggcataaaa cttaaggccaaaaagtgtgatttgtttagacaggaagtggaatacttagggagaaccgaaggacgtgacggcattgacgc actaccacaatctgatatcagactacgattaaaggaaagtagacccaagaacctcatggaggcagaaaagctagcagtca cccaagaggcatttagatcgacagataagcggcgagagaaaaaattgagagtgatagagggcaagattgatgatgagaga attccttgtttctgcgacagtgatctagtgtataaaatgagttgcagagtggtggtcagtgaaacgttggtagtacaacc tgaaactgaagttatagtgcaaggaatattgattgacaagcatagagaaaaaggctcatttgtcctagaaatgtcacctg acttagcagaaaataaaggtttaattgttgcaagggcaataattagtgctgaaggtagtggggtaccattacaaattgtc aacctgagtcatggggaagttaaagttttcaaaggtacagttgttggatattgtagcgaaatggatgaaatgatacctgt gaatagtatggaagctcaagaggtgccagaattccaaaattctgatttaccagctcatttacatcaactttttgattcta gtagtcaacatttgaccaatgaggaaaaagaagttctacgaaaattgctgacagagaacaagaacctattttcgaaatcc tctgctgacattggtcacactaatttggtacagcatgaaattgatacaggcaacgcgaaacctttcaagcaacatcgtta tagaattccattagccaaacacttgcacgcagagaatgagatcaaaagtatggcggatgccggaattattgagccatcaa ctagtccatggtgctcacccattgtcatggcaaccaaaaaggatggatctataagattttgtcttgacttcagaaaatta aattcagttacggaaatggacacaaatttgaagttgagcccaaagaaatgcgttttaatgcagaaagaggtacagttctt aggtcacatagtcagtgaacaaggagtttctacggaccctagtaaggttaaggcaattcaagaatggcctattcctagaa atgtaagagaactaaggagttttgttggaatttgttcctattataggaaatttgtcaaggattttccaaagatagccaaa cttttgcataaactaacagagctgggtgttgaatttgtctggacaatacaatgtcaagagtcatttgaaagattaaagag tcttttaacgcaggcaccaattctcagttatcaaatggagcatgggcagtttattattgatgcggatgcaagttcagttg gcctaagtgccgttttatctcggatacagaacgaagaggaaagggtcatatgctattttagcaagtgttttacaggaagt gaaaggagttattgtgtaactaggaaagaattattggctgttgtgagtgctgtaaagcaatttcaccattatgtttatgg acgtccttttattgtacgcagtgaccatggtgctctcaggtggctaatgaattttaaaaagcctgaaggtcagttggcta gatggttagagactttgtctatgtatgactttcagattgagcatagacctgggagggtgcatgcgaatgcagatgcatta tcgagaaggccatgtgttaattgtactcactgcgagaaatcagagcgaaggtacaacgggaatgaagctcaaatggcaga caaaggaatgaaggcttgtggcatactcgggagtgtggcctactcaccggggtgcgaagcagagctaggcacaggaaaca atcagttacctgtgcatccagagaatgaatatgtggaatctgtttatgggtccggaactgtaaatctagattcgcaaatc ttgactgaatctgaaaggatcatttcagtagggagtgacaaatcctacccgtgtggagtgacttcaaccaaaggtgtcca gcagagcaagagaggattatgtcgtgccgttagctcaaatgaatctaaaagccaggaacgtttactacttcctagagctt catcacgtatccgcaaatggccaaacgatggcgtgtacctaggtatgggatgtgactcaaagatagagatgctttggaag gtgaggcgccatgtgcaggagttacacttttgggtaaaataccaatgctcccaatgccagatacttctaaaccggatgga ctataatcacacttgttgccggaggcatggtcgccaaaatgtccagctggtaaccatcttcagcaagcctttgggtgatg gtaaatttgacaagcgtcacggcgatgaggctttagccatgctgagagagtttaaggatcggcagatggatcaaatgatc aaattcctggagcctaatccaaataaaaggagcagagataatgatagacatcctccaacctcaaanccctattaa |
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Protein
| Protein ID | pfu_aug2.0_1410.1_01606.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1410.1_01606.t1 MLKADVIEPSMSEWASSPVLERKRDGSVRWCVDYRALNKVIKKDIFQLPLVEECMDSLSGNLWYSKLDATWGYWQIKVKD EDKCKTAFTTKYGLYHLRRMSFVTNAPSTFSRVMNLVLRGLHWRTVFAFLGDVLVLGKSFDDHVENLAEVFYRCREYGIK LKAKKCDLFRQEVEYLGRTEGRDGIDALPQSDIRLRLKESRPKNLMEAEKLAVTQEAFRSTDKRREKKLRVIEGKIDDER IPCFCDSDLVYKMSCRVVVSETLVVQPETEVIVQGILIDKHREKGSFVLEMSPDLAENKGLIVARAIISAEGSGVPLQIV NLSHGEVKVFKGTVVGYCSEMDEMIPVNSMEAQEVPEFQNSDLPAHLHQLFDSSSQHLTNEEKEVLRKLLTENKNLFSKS SADIGHTNLVQHEIDTGNAKPFKQHRYRIPLAKHLHAENEIKSMADAGIIEPSTSPWCSPIVMATKKDGSIRFCLDFRKL NSVTEMDTNLKLSPKKCVLMQKEVQFLGHIVSEQGVSTDPSKVKAIQEWPIPRNVRELRSFVGICSYYRKFVKDFPKIAK LLHKLTELGVEFVWTIQCQESFERLKSLLTQAPILSYQMEHGQFIIDADASSVGLSAVLSRIQNEEERVICYFSKCFTGS ERSYCVTRKELLAVVSAVKQFHHYVYGRPFIVRSDHGALRWLMNFKKPEGQLARWLETLSMYDFQIEHRPGRVHANADAL SRRPCVNCTHCEKSERRYNGNEAQMADKGMKACGILGSVAYSPGCEAELGTGNNQLPVHPENEYVESVYGSGTVNLDSQI LTESERIISVGSDKSYPCGVTSTKGVQQSKRGLCRAVSSNESKSQERLLLPRASSRIRKWPNDGVYLGMGCDSKIEMLWK VRRHVQELHFWVKYQCSQCQILLNRMDYNHTCCRRHGRQNVQLVTIFSKPLGDGKFDKRHGDEALAMLREFKDRQMDQMI KFLEPNPNKRSRDNDRHPPTSXPY |
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