Gene
| Gene Model ID | pfu_aug2.0_1427.1_24917 |
|---|---|
| Locus | scaffold1427.1 : 122572 ... 136165 : - |
| To GenomeBrowser | scaffold1427.1:122572..136165 |
| Genes list of scaffold | scaffold1427.1 |
| Synonym | pfu_aug1.0_21145.1_25919 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1427.1_24917.t1 | 2 | 1 | C1q | 83 | 190 | 3.59994e-42 | 143.3 | 1.5e-21 | 2.2e-17 | 63.2 |
| pfu_aug2.0_1427.1_24917.t1 | 2 | 2 | C1q | 222 | 349 | 3.59994e-42 | 143.3 | 3.2e-26 | 4.7e-22 | 78.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1427.1_24917.t1 | gi|669289367|ref|XP_008637629.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 isoform X2 [Corvus brachyrhynchos] | 4.0e-19 |
| pfu_aug2.0_1427.1_24917.t1 | gi|632955786|ref|XP_007893636.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4-like [Callorhinchus milii] | 5.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_1427.1_24917.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1427.1_24917.t1 atgaatttactcgtacttacgttctgcttcacatcaccaatttttgctactaatttccccagcagtgaacaagaattggt gagggacacaatgatgcaggaaatgatgggaagacttaacaatttagaggagagggtacaaaaatgtgagacgggactac aacaagtatctacaagcagaacaggaattaaaaggtatttacttagcggagtacaaaatacaacctctgatgcgacagat gtatcattctacgcccatctatcgaagaatgtagccggtataggagtgcatcacacgatcatattcgatattgtgcgaaa caatcacggtaacgcctataataagtatgacggaatattcaccgccaaaatcccgggaacttacttctttatttggacaa tatctgcacgtgatcgtactggcatggaaacggaacttgtcgtaaatggtgtggtatttggacatgtcatgggagatgca ggtgatcacgatgattgggctgttgcaacaggtttcgtcattgttcgactcgacgttaatgatacagtatggatacgttc tggaccggctagttccggccacttaacgggtactggttatgattacaagagagttttactagaaagtttgccagatacaa actcagagtcgactcgtgtatcattctacgcccatctgtccaagaatttagccggtataggagtacatcacccaatcgta ttcgacaccgtgcggtacaatgatggaaatgcctacaacaaagtcgacggagaattcacggctaaagtaccggggactta cttctttatttggacaatttctgcacgcgatcgcacgtacatggaaacggaacttgtcgtaaatggcgttgtattcggac atgttattggggatgcggctgaccacgatgactggggtgtagcaacaggtttcgtcattgttcgactcaatgttaatgac acagtctggattcgttctggacctgtgaacaatggtcagttgacgggtaccggttatggtacaacatcatttggtggtta ccttctctatcagtaa |
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Protein
| Protein ID | pfu_aug2.0_1427.1_24917.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1427.1_24917.t1 MNLLVLTFCFTSPIFATNFPSSEQELVRDTMMQEMMGRLNNLEERVQKCETGLQQVSTSRTGIKRYLLSGVQNTTSDATD VSFYAHLSKNVAGIGVHHTIIFDIVRNNHGNAYNKYDGIFTAKIPGTYFFIWTISARDRTGMETELVVNGVVFGHVMGDA GDHDDWAVATGFVIVRLDVNDTVWIRSGPASSGHLTGTGYDYKRVLLESLPDTNSESTRVSFYAHLSKNLAGIGVHHPIV FDTVRYNDGNAYNKVDGEFTAKVPGTYFFIWTISARDRTYMETELVVNGVVFGHVIGDAADHDDWGVATGFVIVRLNVND TVWIRSGPVNNGQLTGTGYGTTSFGGYLLYQ |
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