Gene
| Gene Model ID | pfu_aug2.0_1429.1_31680 |
|---|---|
| Locus | scaffold1429.1 : 51209 ... 72865 : - |
| To GenomeBrowser | scaffold1429.1:51209..72865 |
| Genes list of scaffold | scaffold1429.1 |
| Synonym | pfu_aug1.0_1825.1_22768 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1429.1_31680.t1 | 4 | 1 | TSP_1 | 181 | 230 | 1.7e-09 | 37.6 | 6.8e-13 | 1.7e-09 | 37.6 |
| pfu_aug2.0_1429.1_31680.t1 | 4 | 2 | TSP_1 | 276 | 282 | 1.7e-09 | 37.6 | 4.2 | 10000.0 | -3.4 |
| pfu_aug2.0_1429.1_31680.t1 | 4 | 3 | TSP_1 | 301 | 311 | 1.7e-09 | 37.6 | 2.5 | 6100.0 | -2.6 |
| pfu_aug2.0_1429.1_31680.t1 | 1 | 1 | MAM | 486 | 622 | 1.3e-11 | 44.5 | 1.3e-14 | 3.3e-11 | 43.2 |
| pfu_aug2.0_1429.1_31680.t1 | 4 | 4 | TSP_1 | 678 | 687 | 1.7e-09 | 37.6 | 4.4 | 11000.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1429.1_31680.t1 | gi|688569121|ref|XP_002663267.4| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 13 [Danio rerio] | 5.0e-31 |
| pfu_aug2.0_1429.1_31680.t1 | gi|585713481|ref|XP_006900683.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 13 [Elephantulus edwardii] | 2.0e-29 |
| pfu_aug2.0_1429.1_31680.t1 | gi|507551712|ref|XP_004659655.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Jaculus jaculus] | 2.0e-28 |
| pfu_aug2.0_1429.1_31680.t1 | gi|260813189|ref|XP_002601301.1| | hypothetical protein BRAFLDRAFT_81341 [Branchiostoma floridae] | 3.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_1429.1_31680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1429.1_31680.t1 atggctggaagcatgaaagatgaaaatttaatgctcgaaacacctgtcagcattggtatgtatcacgatgtagacagagg ttgtacaggaaataacactgggaacatgggtggatatggtgcgggatggagcacttgcaatcgggatgacatgcatacat atctacagaaagctaaagcgcagtgtgtctttgaggaaaatgtgcctctggaggtttctaatgaagtaataggtccctca aagatgataggatatatcactcttgattccagtatgcctggtatggaatacactgccgatgagatttgtcagaaaaaata cgggaggcttttcaagtacagagagtttcctcttgtcggatcctgtaatattcacagctgtgttaaccatgacgtcactt ccccttactatggacaaatgttcaaacaaacctacgttcccggtctttactgtggacaatcaaagatatgtttccaacat ggttgtaaagacctcgcagtagcaaggcagtacaacgtaactgtaagagccggaggctggagtgagtggggtgaatggtc aggctgcgcgcgcacatgtgggcgtggagtaaacttccggcgtagaaaatgctcaaacccatcaccattaaatcatgaga cgtgtagtggaaatgaatacgatgcagtagtgtgcaaccaacagccctgtgcttctgatgcaattgacaatggagaactg ttgaaacagagggcaagtgagacttgtgcaaggttgattgaggcgggaattgtcaatagaacgaactatttacctactgg agaacgattttcttacaaaagttatggccagtgtgaggtactctgtgatacagcggatggatttatcaggccagcattca ctagatttggcttgatgccacagggaaccccgtgtgcaggagagggacaggaagttgctgatacttataactggcctaga agacctggttatacctacatgtgcattgacggtctttgcggaagatttggttgtgacaacaagtacaatggtgctgtgta tgatgtttgcggggtgtgtggcggagatggtacaacgtgtaatcctataatacatacatacaatactgttcctggggaag gcaacagaactaccgtagccaccctggccgtaggatcttacaacatactgtttaacttcagttggggtgcaatgaggcaa aatttcttagaggtatggaccatggataacaaggttgccttagccagtcgagtagcatcctcctgggtatggaatacaga cggaaatcctatagaaatagccggagccaattggtcatatagctttagttcccagtatttatataccaaaggaccaacaa tagaacctttgcaaataaagctttaccagttcaggagttttgagaatacagggatttcttatgccttttctgaggctatt ccagatgaaataccatgtacatttgatgacgatagataccctttatgtggttggacagccgtcggatgggtggtgacaca aaaatataatgacacaacgactttaagcggaataggttcctttatagctgctaataccaatagttccagtattaatacaa catcaatttctccgtccagtgaacctcagtgccttttcttccgttacattttatacggaaatatggacacaaaattacaa atatctttatctaaaaatagaagtatgatatggagtacagaaggcagtgcagacacaaaatggcgatgtggtgccgctga gatctgggctttccaatctgaaacgatagagataattgctgtcaaagaaatgccaaatagtataattgcgttggatgata ttaacatcaggaatgaggttgtctgctctgtcaaagcatgcgatgagtatataccaacagtagtcacagttttaccaaca acgtcgacaatccctccggagcctcttccagattatttaccatttatgcttgctgggatagccatattgattgtatgcat attggcagtcatagtcggattgtgtctttcaaggcgtagatctagaaaaaagaacaggaagagctcagggaaactggtgg tgcttactacacctcagtttaacggtccaaaacccacggatgagaaatatcaattacagtctacttacaatgatgagata agtgacagtgatatacgactggaagtagaagcttga |
|
Protein
| Protein ID | pfu_aug2.0_1429.1_31680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1429.1_31680.t1 MAGSMKDENLMLETPVSIGMYHDVDRGCTGNNTGNMGGYGAGWSTCNRDDMHTYLQKAKAQCVFEENVPLEVSNEVIGPS KMIGYITLDSSMPGMEYTADEICQKKYGRLFKYREFPLVGSCNIHSCVNHDVTSPYYGQMFKQTYVPGLYCGQSKICFQH GCKDLAVARQYNVTVRAGGWSEWGEWSGCARTCGRGVNFRRRKCSNPSPLNHETCSGNEYDAVVCNQQPCASDAIDNGEL LKQRASETCARLIEAGIVNRTNYLPTGERFSYKSYGQCEVLCDTADGFIRPAFTRFGLMPQGTPCAGEGQEVADTYNWPR RPGYTYMCIDGLCGRFGCDNKYNGAVYDVCGVCGGDGTTCNPIIHTYNTVPGEGNRTTVATLAVGSYNILFNFSWGAMRQ NFLEVWTMDNKVALASRVASSWVWNTDGNPIEIAGANWSYSFSSQYLYTKGPTIEPLQIKLYQFRSFENTGISYAFSEAI PDEIPCTFDDDRYPLCGWTAVGWVVTQKYNDTTTLSGIGSFIAANTNSSSINTTSISPSSEPQCLFFRYILYGNMDTKLQ ISLSKNRSMIWSTEGSADTKWRCGAAEIWAFQSETIEIIAVKEMPNSIIALDDINIRNEVVCSVKACDEYIPTVVTVLPT TSTIPPEPLPDYLPFMLAGIAILIVCILAVIVGLCLSRRRSRKKNRKSSGKLVVLTTPQFNGPKPTDEKYQLQSTYNDEI SDSDIRLEVEA |
|