Gene
| Gene Model ID | pfu_aug2.0_1430.1_01625 |
|---|---|
| Locus | scaffold1430.1 : 23656 ... 76145 : - |
| To GenomeBrowser | scaffold1430.1:23656..76145 |
| Genes list of scaffold | scaffold1430.1 |
| Synonym | pfu_aug1.0_7337.1_60228 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1430.1_01625.t1 | 2 | 1 | MFS_1 | 1 | 36 | 1.1e-07 | 30.9 | 5.7e-06 | 0.0095 | 14.6 |
| pfu_aug2.0_1430.1_01625.t1 | 2 | 2 | MFS_1 | 51 | 149 | 1.1e-07 | 30.9 | 5.8e-08 | 9.5e-05 | 21.2 |
| pfu_aug2.0_1430.1_01625.t1 | 1 | 1 | F-box-like | 342 | 385 | 6.5e-13 | 48.1 | 1.2e-15 | 1.9e-12 | 46.6 |
| pfu_aug2.0_1430.1_01625.t1 | 1 | 1 | F-box | 343 | 381 | 2.2e-08 | 33.5 | 3.9e-11 | 6.5e-08 | 32.0 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 1 | LRR_6 | 407 | 429 | 1.2e-14 | 52.7 | 0.0087 | 14.0 | 6.0 |
| pfu_aug2.0_1430.1_01625.t1 | 6 | 1 | LRR_4 | 408 | 447 | 1.2e-09 | 37.5 | 6.0e-06 | 0.0099 | 15.4 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 2 | LRR_6 | 431 | 455 | 1.2e-14 | 52.7 | 2.1e-05 | 0.035 | 14.1 |
| pfu_aug2.0_1430.1_01625.t1 | 6 | 2 | LRR_4 | 456 | 479 | 1.2e-09 | 37.5 | 0.051 | 84.0 | 2.9 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 3 | LRR_6 | 457 | 481 | 1.2e-14 | 52.7 | 0.0022 | 3.7 | 7.9 |
| pfu_aug2.0_1430.1_01625.t1 | 6 | 3 | LRR_4 | 459 | 507 | 1.2e-09 | 37.5 | 0.0047 | 7.7 | 6.2 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 4 | LRR_6 | 483 | 507 | 1.2e-14 | 52.7 | 0.00045 | 0.75 | 10.0 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 5 | LRR_6 | 521 | 533 | 1.2e-14 | 52.7 | 4.8 | 7800.0 | -2.4 |
| pfu_aug2.0_1430.1_01625.t1 | 6 | 4 | LRR_4 | 528 | 551 | 1.2e-09 | 37.5 | 0.044 | 72.0 | 3.1 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 6 | LRR_6 | 535 | 559 | 1.2e-14 | 52.7 | 0.0035 | 5.7 | 7.3 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 7 | LRR_6 | 568 | 584 | 1.2e-14 | 52.7 | 0.79 | 1300.0 | 0.0 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 8 | LRR_6 | 587 | 610 | 1.2e-14 | 52.7 | 0.041 | 67.0 | 4.0 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 9 | LRR_6 | 613 | 637 | 1.2e-14 | 52.7 | 0.1 | 170.0 | 2.7 |
| pfu_aug2.0_1430.1_01625.t1 | 6 | 5 | LRR_4 | 615 | 652 | 1.2e-09 | 37.5 | 0.0052 | 8.5 | 6.1 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 10 | LRR_6 | 639 | 662 | 1.2e-14 | 52.7 | 7.9e-05 | 0.13 | 12.3 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 11 | LRR_6 | 670 | 690 | 1.2e-14 | 52.7 | 0.095 | 160.0 | 2.8 |
| pfu_aug2.0_1430.1_01625.t1 | 6 | 6 | LRR_4 | 670 | 706 | 1.2e-09 | 37.5 | 0.0012 | 2.1 | 8.0 |
| pfu_aug2.0_1430.1_01625.t1 | 12 | 12 | LRR_6 | 693 | 712 | 1.2e-14 | 52.7 | 0.89 | 1500.0 | -0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1430.1_01625.t1 | gi|260821706|ref|XP_002606244.1| | hypothetical protein BRAFLDRAFT_84015 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1430.1_01625.t1 | gi|345491289|ref|XP_001603165.2| | PREDICTED: F-box/LRR-repeat protein 20 isoform X2 [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_1430.1_01625.t1 | gi|749794526|ref|XP_011150599.1| | PREDICTED: F-box/LRR-repeat protein 20 isoform X1 [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_1430.1_01625.t1 | gi|524903934|ref|XP_005108158.1| | PREDICTED: F-box/LRR-repeat protein 20-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1430.1_01625.t1 | gi|241813200|ref|XP_002414639.1| | fbxl20, putative [Ixodes scapularis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1430.1_01625.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1430.1_01625.t1 atggttctaccgatattaggatctttcctgactgacagatacggctggccaggaactttccttatcttctccggggttgg acttcagggtgcatactgtggaataatgataaaaacacttggcccatcgagtatccgatccgcacaaggtatcatgtcac gtataatattaggtacattatcagactcgcctcggtgtaatagactgattataaatggggcgtcatttgtcctacttggt atctgtacgtcactgtgtgttctgtttagggaggaatacattttcttcatttacacgacagttttaggtgctgttacagg tctgttcgggatatacctatcagtcatagttgtggacatcgttgggaagaataacctcagtttagcatatggatacctca tctgtatggaaggcattgctgttgtggctggaccgccgctagcagcacaaaatcgagaattcagaaaatcagaaaccgaa ggcatgcaaaatcaggatgaagcaggaaccaaatcaaataaacaaaatcctccgccacatgaaaagaagcgaaatcccca tatgggagtgagacataatgttcttggagtctcaaagtcgagacggcaaggccaaatcgtgataactcccatcggaacgg ttaagaaccccggaatgaacaacattaattccgaagtgaagccaggtgcccggggagactcagtgtctcctagttggttg tatgcaacacccgtcgcaaccgctccacaaaaacctgtcaaattcagcaattgtcttgatgtaacttttgatgtacatat cagacacgtgaacagatataaaaatcctcatcagggtaaggagggaaggttgagaaaggagaggaaggggcgggaggaag gaggaaggggcggaagggggaaggatgaaaaggaggataagcgaggagagggcgggagtgggagtaattgtttctccaag gcattaactacagtatcaaccacatcgactataacctcggatgatgatgctcccattaacaagaaactgccaaaggaact cttactaaggatattttccttcctagatgtagtatcattatgtagatgtgctcaagtatcaaagttttggaacattctag cccttgatggcagtaactggcagagagtggatctgtttgaattccaaagagatattgttggaccagtagtagaaaacata tcaaaaagatgtggagggtttctgaaatctctaagtctgaggggctgtcagagtataacagatggtgctctcaaaacatt ttctcaacaatgtagaaatatagaggagctgaatctgaacaattgtaaagatatatctgacacaacttgtgagagtttgg gtaaatactgtcacaagctagccaagttggatataagctcctgtccaagaatttcaaataattccttagcagcccttggt aatggctgtataaacctgaaaatagtagatatatcatggtgcacacatttatccagtgatggactggaggcgttagctaa aggatgtacagaaatacacacgtttatcggtaaaggtctcacacaggtgacggatgctggcattggtcacatagctaagt attgtaaacttctgaagaagattgatctcaacagctgttcaaatataacagacgaagctgtgcatgagataggacagaat tgtcatggactcctgttctgttgtatatctaactgtgcacgattaactgacgcatcacttgtctcattgggtcatggatg tcacgagttaaggacattagaggtggcctgttgttcccatttcacagacaatggtttccaggcattagcaaggaattgca ataagctggagaaaatggacttagaggaatgtatacaaatcactgatgccaccttgaactacctagcaaactactgtccc aacattgttgccctgagtttgtcacattgtgagttaatcacggatgagggaatccgacatattggatctggagcttgtgc tactgaacatttgagaatcttagaacttgacaattgtccgttaattaccgacgcttcattagaacatttaatggggtgtc agggtttagaaaggatagaattatatgactgtcaactcatcactagagcaggcataagaagattgcgggtatgttccagt gaaactggaattggacatgagtgtgatattatagttatatattttagttacttggaacattatgtgagagttgagctcac tttagccaagctcaagtga |
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Protein
| Protein ID | pfu_aug2.0_1430.1_01625.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1430.1_01625.t1 MVLPILGSFLTDRYGWPGTFLIFSGVGLQGAYCGIMIKTLGPSSIRSAQGIMSRIILGTLSDSPRCNRLIINGASFVLLG ICTSLCVLFREEYIFFIYTTVLGAVTGLFGIYLSVIVVDIVGKNNLSLAYGYLICMEGIAVVAGPPLAAQNREFRKSETE GMQNQDEAGTKSNKQNPPPHEKKRNPHMGVRHNVLGVSKSRRQGQIVITPIGTVKNPGMNNINSEVKPGARGDSVSPSWL YATPVATAPQKPVKFSNCLDVTFDVHIRHVNRYKNPHQGKEGRLRKERKGREEGGRGGRGKDEKEDKRGEGGSGSNCFSK ALTTVSTTSTITSDDDAPINKKLPKELLLRIFSFLDVVSLCRCAQVSKFWNILALDGSNWQRVDLFEFQRDIVGPVVENI SKRCGGFLKSLSLRGCQSITDGALKTFSQQCRNIEELNLNNCKDISDTTCESLGKYCHKLAKLDISSCPRISNNSLAALG NGCINLKIVDISWCTHLSSDGLEALAKGCTEIHTFIGKGLTQVTDAGIGHIAKYCKLLKKIDLNSCSNITDEAVHEIGQN CHGLLFCCISNCARLTDASLVSLGHGCHELRTLEVACCSHFTDNGFQALARNCNKLEKMDLEECIQITDATLNYLANYCP NIVALSLSHCELITDEGIRHIGSGACATEHLRILELDNCPLITDASLEHLMGCQGLERIELYDCQLITRAGIRRLRVCSS ETGIGHECDIIVIYFSYLEHYVRVELTLAKLK |
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