Gene
Gene Model ID | pfu_aug2.0_1437.1_24921 |
---|---|
Locus | scaffold1437.1 : 132906 ... 158105 : + |
To GenomeBrowser | scaffold1437.1:132906..158105 |
Genes list of scaffold | scaffold1437.1 |
Synonym | pfu_aug1.0_39332.1_62991 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1437.1_24921.t1 | 2 | 1 | Pro_dh | 281 | 432 | 9.99995e-41 | 139.6 | 1.5e-34 | 7.7e-31 | 107.2 |
pfu_aug2.0_1437.1_24921.t1 | 2 | 2 | Pro_dh | 435 | 475 | 9.99995e-41 | 139.6 | 3.2e-11 | 1.6e-07 | 30.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1437.1_24921.t1 | gi|602629177|ref|XP_007421517.1| | PREDICTED: probable proline dehydrogenase 2-like [Python bivittatus] | 0.0 |
pfu_aug2.0_1437.1_24921.t1 | gi|657754587|ref|XP_008312830.1| | PREDICTED: probable proline dehydrogenase 2 [Cynoglossus semilaevis] | 0.0 |
pfu_aug2.0_1437.1_24921.t1 | gi|736215554|ref|XP_010778459.1| | PREDICTED: probable proline dehydrogenase 2 [Notothenia coriiceps] | 0.0 |
pfu_aug2.0_1437.1_24921.t1 | gi|56789108|gb|AAH88046.1| | prodh2-prov protein, partial [Xenopus (Silurana) tropicalis] | 0.0 |
pfu_aug2.0_1437.1_24921.t1 | gi|147900029|ref|NP_001083128.1| | probable proline dehydrogenase 2 [Xenopus laevis] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_1437.1_24921.t1 |
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Definition | - |
>pfu_aug2.0_1437.1_24921.t1 atgaacggagcaacgaataaaatgttgtgtagaaactttgtaaagaaatacgttcttggatccggaatattttatggaaa ttacgggaagtcgtcaagtttcttggtaagaccatctggagtctacagagcacagactatccattctgttagagaatcaa aaactgagaagtcgtcgactttgaacagaacagcttcttctgtagcggtgaattcagatgagtttggagaggagaacaag gccatattgaattttgatgactatatgagagctttccagaataaatcggctgtggacttgctgcgtgctcttgggatctt gtacgcatgttctagcgacatcttggtcagaaacagttatcagctcttacagagtagcaggaaggtgttaggccggcgtc tgtttaacagccttgtcaagcctacgctgttcagacagtttgtaggtggtgacactgaggagagtattacccgtgccgta cagaaactacaaaatgacgggataggtcctatgttgatgttaccgatggaggaggacgccggacaggaaactatgtnggc cttgtcaagcctacgttattcagacagtttatcggagacttggtatgaccgtaacttagatttaatgatgaaaggactca aactgaccaagagtttcggagagaaacacccaatgttgcagattaagttaacagccttattgtcgggatcactgtgtcaa agaatgtctgaatgttgtccagagccgtccagagagccgggtacaatagaggcagtagccaatgctcttctaacagggaa aaacttaaccagtttcaaggacctttcaggagaagaacttgatcaagtaaatagagccataacaagaataagaaaactct gtaatgaggccagagacctaggggttctaatccttgtggacgcagagtatacatacctaaaccccgcacttaaccttcta gccctggccatgatgtgtcatacagcggacaaacaacctataatcatgtatacataccaaaattacctcaaggctaccca cggtctgttatgccgagacgttgactttatcttggccaatggggtatgtttcggtagcaagctcgtcagaggggcataca tggacaaagagaggaagctcgccggtatccaaggttacccagatcctgtatgtgacacgtttgaagacacaactgataat tacaacaagtccatggataccatgctacgtcacatagcaacgggaaatggtcgcgttgcaaccgttatcgcatctcacaa cgaagacacagttcacacaggtcagagtaattacaaagtatacaagtccattccatacggtattccagaggacacactgc cgtatctttcccgccgtgtgacggagaatagggcggtactggatggtgcaaggcgtgagcgatctgataataccgactct gagtctgataaaggatctgacgaggcatcggaaataaacgtaggaggagacgatgtgaagggagaccaagtagatataga tagcagtgagggggacacagacggacagactaaaccagagaaacggaaaagacaagaggaaggaaagaagaaaaagaaaa aaagaaaatccataactgctgaacttaaagaaaagggagatgactctagaggaagtccagaagcccttgtcagtctgatt gaaaaaacattcaaggatgcattgtcaccagtagagtgggatgaagtacagttaaacctaggcaatgacttttacccgag cagtgagaaggaccacactcctgtatcgtatttacgttccattctgccgaaatggaagaaacagatgaagacaagtcaac taaagccgggatcacctctactgttagttcttactccctctgccattagggctgtacaactcaacag |
Protein
Protein ID | pfu_aug2.0_1437.1_24921.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1437.1_24921.t1 MNGATNKMLCRNFVKKYVLGSGIFYGNYGKSSSFLVRPSGVYRAQTIHSVRESKTEKSSTLNRTASSVAVNSDEFGEENK AILNFDDYMRAFQNKSAVDLLRALGILYACSSDILVRNSYQLLQSSRKVLGRRLFNSLVKPTLFRQFVGGDTEESITRAV QKLQNDGIGPMLMLPMEEDAGQETMXALSSLRYSDSLSETWYDRNLDLMMKGLKLTKSFGEKHPMLQIKLTALLSGSLCQ RMSECCPEPSREPGTIEAVANALLTGKNLTSFKDLSGEELDQVNRAITRIRKLCNEARDLGVLILVDAEYTYLNPALNLL ALAMMCHTADKQPIIMYTYQNYLKATHGLLCRDVDFILANGVCFGSKLVRGAYMDKERKLAGIQGYPDPVCDTFEDTTDN YNKSMDTMLRHIATGNGRVATVIASHNEDTVHTGQSNYKVYKSIPYGIPEDTLPYLSRRVTENRAVLDGARRERSDNTDS ESDKGSDEASEINVGGDDVKGDQVDIDSSEGDTDGQTKPEKRKRQEEGKKKKKKRKSITAELKEKGDDSRGSPEALVSLI EKTFKDALSPVEWDEVQLNLGNDFYPSSEKDHTPVSYLRSILPKWKKQMKTSQLKPGSPLLLVLTPSAIRAVQLN |