Gene
| Gene Model ID | pfu_aug2.0_1443.1_11670 |
|---|---|
| Locus | scaffold1443.1 : 129875 ... 132015 : - |
| To GenomeBrowser | scaffold1443.1:129875..132015 |
| Genes list of scaffold | scaffold1443.1 |
| Synonym | pfu_aug1.0_21960.1_54806 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1443.1_11670.t1 | 2 | 1 | zf-C3HC4_3 | 13 | 67 | 5.2e-07 | 29.2 | 4.2e-10 | 5.2e-07 | 29.2 |
| pfu_aug2.0_1443.1_11670.t1 | 4 | 1 | zf-C3HC4 | 15 | 59 | 1.0e-08 | 34.6 | 8.4e-12 | 1.0e-08 | 34.6 |
| pfu_aug2.0_1443.1_11670.t1 | 3 | 1 | zf-RING_2 | 15 | 63 | 4.4e-07 | 29.6 | 3.5e-10 | 4.4e-07 | 29.6 |
| pfu_aug2.0_1443.1_11670.t1 | 4 | 2 | zf-C3HC4 | 59 | 81 | 1.0e-08 | 34.6 | 0.12 | 150.0 | 2.0 |
| pfu_aug2.0_1443.1_11670.t1 | 2 | 1 | zf-B_box | 101 | 146 | 4.1e-08 | 32.9 | 9.4e-08 | 0.00012 | 21.9 |
| pfu_aug2.0_1443.1_11670.t1 | 2 | 2 | zf-C3HC4_3 | 102 | 134 | 5.2e-07 | 29.2 | 0.53 | 660.0 | 0.0 |
| pfu_aug2.0_1443.1_11670.t1 | 4 | 3 | zf-C3HC4 | 104 | 135 | 1.0e-08 | 34.6 | 2.0 | 2500.0 | -1.8 |
| pfu_aug2.0_1443.1_11670.t1 | 3 | 2 | zf-RING_2 | 104 | 136 | 4.4e-07 | 29.6 | 1.1 | 1400.0 | -0.8 |
| pfu_aug2.0_1443.1_11670.t1 | 2 | 2 | zf-B_box | 162 | 193 | 4.1e-08 | 32.9 | 7.0e-09 | 8.7e-06 | 25.5 |
| pfu_aug2.0_1443.1_11670.t1 | 3 | 3 | zf-RING_2 | 179 | 196 | 4.4e-07 | 29.6 | 2.5 | 3100.0 | -2.0 |
| pfu_aug2.0_1443.1_11670.t1 | 4 | 4 | zf-C3HC4 | 183 | 188 | 1.0e-08 | 34.6 | 6.9 | 8600.0 | -3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1443.1_11670.t1 | gi|291221736|ref|XP_002730877.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 7.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_1443.1_11670.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1443.1_11670.t1 atggcagcttcaaacacttctccgtttaccgaacttactttgtgccctatttgctttgagggatttaaatgccccaaaac tctgccatgcttacataacttttgtgaatcgtgcatcgggagttatcttgcatcggtatttgagaaagaaaaagataaag ttaagtgtgccagttgtccaatttgccgagcggacgttgaaaagccacaagacgtgaatacatcagaggaatggattaaa tgcctaccgacaaatcatatgttagtcagtatggtcgatgcggtcactggttttcaacatgaaaatatttgcaatttatg cactatcgaaaacaaaaccgaaagtgcagtgtattggtgcgcggattgccgaaaagcactgtgtgaactctgtgaacgta aacattcatacttaatacaaggacacaaagttgaaaatgtaaagcaaatgactgaaatcgaacccaaggcattgagtatc agcgtcaagtgtccacggcacgaagagaaagtgatagaggcgtactgctttgaccacaatgccccttgttgttcatcttg cgttatgattacccatcggaaatgtagcagagtcgaagaagcaaaaattgcagcagaggaattaagaaactcgaaagaga tccttggattacaggaagattttgagattcatagaaagaaaatgggagagctgtcagacaaaactgctgaaaatataaaa tcattcaagaataaagtagccgacattcatagtgagatcacaacgcttcggtcagatataaacaggcatttggacgacat agaactgaaagcaaaacaagaactgaatgcccttgagaaagaacatgtaccagaaatggaagcaactgtacaagtgatgt caggagaaacaaaacgagcagagaatgatttgataatgctgaaggcaagtgtccaatatgcctcagatgagcagtttttg tgcgacattgaaaaaatgagaaatgaatcgaacaaaatcaaagaaatttgggaacaaaacagaacaaagatcaaatacaa gaagttgatctttgaaatgaatgttgaattaaagtatctaaaaaatgtccagaccttcatgcatgtaaacctaacagagg ataagatggtgatggaatcagatccagttgacctactccaggctgagcccgtgaaaatatcacaatttgctatagatgtc aactgttctaacatcacaggatgtgtcatggttgatgacaaaagagtactgtttgcaacatcttcacttaatcgtgttga tatgtatggaatagatgggacgtatctaacttgtcttaaccttggaaatcaggcatggggcgtcgatgttattgacaaga atactggagttgcaacaatgcgggctgcaggaaaggtagctctattttctattgaagacaagaatctgacattgataaaa actgtaggattttcaaaatgtgcaaacatctgtggtataaaaagttatatgggaaaaatctacgttggctgtaccaacaa aattattgttctgaataagaatggtttacttattgaaaaaatagcacagccttcacaggattggatacgccatctaagtg tttcagatgataaaattctatataccaatttaatagttgtacaatgtcttacactaagtggagataatgtcttccaattc tcatcaaaggaactacatcatcctgaaggaataagttcagactgtgacaataacgtctatgtgattggtcagacatcaag aaacatttttcagcttaacccccagggaaagtttcaccgagttctactccaaaatctctcgtcaggatgcatcaattccc tctccttctgtagacaaactaatagacttttgttcaacacagggaggattgtctatatctacgagatgaagaggaagcag tcacaggctccatag |
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Protein
| Protein ID | pfu_aug2.0_1443.1_11670.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1443.1_11670.t1 MAASNTSPFTELTLCPICFEGFKCPKTLPCLHNFCESCIGSYLASVFEKEKDKVKCASCPICRADVEKPQDVNTSEEWIK CLPTNHMLVSMVDAVTGFQHENICNLCTIENKTESAVYWCADCRKALCELCERKHSYLIQGHKVENVKQMTEIEPKALSI SVKCPRHEEKVIEAYCFDHNAPCCSSCVMITHRKCSRVEEAKIAAEELRNSKEILGLQEDFEIHRKKMGELSDKTAENIK SFKNKVADIHSEITTLRSDINRHLDDIELKAKQELNALEKEHVPEMEATVQVMSGETKRAENDLIMLKASVQYASDEQFL CDIEKMRNESNKIKEIWEQNRTKIKYKKLIFEMNVELKYLKNVQTFMHVNLTEDKMVMESDPVDLLQAEPVKISQFAIDV NCSNITGCVMVDDKRVLFATSSLNRVDMYGIDGTYLTCLNLGNQAWGVDVIDKNTGVATMRAAGKVALFSIEDKNLTLIK TVGFSKCANICGIKSYMGKIYVGCTNKIIVLNKNGLLIEKIAQPSQDWIRHLSVSDDKILYTNLIVVQCLTLSGDNVFQF SSKELHHPEGISSDCDNNVYVIGQTSRNIFQLNPQGKFHRVLLQNLSSGCINSLSFCRQTNRLLFNTGRIVYIYEMKRKQ SQAP |
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