Gene
| Gene Model ID | pfu_aug2.0_1443.1_11672 |
|---|---|
| Locus | scaffold1443.1 : 149876 ... 151625 : - |
| To GenomeBrowser | scaffold1443.1:149876..151625 |
| Genes list of scaffold | scaffold1443.1 |
| Synonym | pfu_aug1.0_962.1_58323 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1443.1_11672.t1 | 2 | 1 | zf-C3HC4_3 | 13 | 65 | 1.8e-06 | 27.5 | 1.5e-09 | 1.8e-06 | 27.5 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 1 | zf-C3HC4 | 15 | 57 | 1.0e-08 | 34.6 | 8.5e-12 | 1.0e-08 | 34.6 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 1 | zf-RING_2 | 15 | 61 | 8.9e-06 | 25.4 | 7.2e-09 | 8.9e-06 | 25.4 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 1 | zf-B_box | 56 | 60 | 8.6e-09 | 35.1 | 6.8 | 8500.0 | -3.3 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 2 | zf-C3HC4 | 57 | 79 | 1.0e-08 | 34.6 | 0.14 | 170.0 | 1.9 |
| pfu_aug2.0_1443.1_11672.t1 | 2 | 2 | zf-C3HC4_3 | 98 | 132 | 1.8e-06 | 27.5 | 1.6 | 2000.0 | -1.5 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 2 | zf-B_box | 99 | 145 | 8.6e-09 | 35.1 | 4.8e-08 | 5.9e-05 | 22.8 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 2 | zf-RING_2 | 112 | 133 | 8.9e-06 | 25.4 | 2.9 | 3600.0 | -2.2 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 3 | zf-B_box | 160 | 191 | 8.6e-09 | 35.1 | 4.4e-09 | 5.4e-06 | 26.2 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 3 | zf-RING_2 | 177 | 193 | 8.9e-06 | 25.4 | 0.87 | 1100.0 | -0.5 |
| pfu_aug2.0_1443.1_11672.t1 | 3 | 3 | zf-C3HC4 | 181 | 186 | 1.0e-08 | 34.6 | 3.3 | 4100.0 | -2.5 |
Transcript
| Transcript ID | pfu_aug2.0_1443.1_11672.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1443.1_11672.t1 atggcaacttcgaacagttctccatttacagaactaacgttgtgtcctctttgctttgagagatttaaatgtccaaaaac tcttccatgtttacataacttttgtgaatcgtgcatcgggagttatattgcatcggtatttgagaaagaaaatgttaagt gtgtcagttgtcccatttgccgagcggatgttcaaaagccacaacacgtaaatacatcggaggaatggactaaatgtcta ccgacaaatcatatgttagtaagcatgctcgatgcggttactggttttcaacatgaaattatttgcaattcatgcaatat cgaaaacaaaaccgaaagtgcagtatattggtgtgcggattgtcgaaaggcactttgtgaactctgtgaacgcaaacata catactttatacacggacacaatgttgtaaatttgatgaaaatgactgaaattgaaccaaaggcattgagtgtcagcgtc aagtgtccaaggcacgaagagaaagttatagaagcgtactgctttgaccacaataccccttgttgttcatcttgcgttat gattacccatcggaaatgcaacagagtcgaagaagcaaagaatgcagcagaggaaatgagaaattcgaaacagatggttg aattacaggaaaattttgagatttatagaaaggaaatgggtcagctgacagacgaagctactgagaatgtaaattcattc aaggatgaattagccgatattcataatgaaatcacaacgtttcgatcacatataaacagacaattggacgacatagaact gaaagcaaaacaagaactaaatgcccttgagaaagaacatttaccagaaatggaagcaacagtacaaataatgtcaggag aaacaaaacgagcagagaatgatttgatgattttgaaggcaagtgtccaatatgcatcagatgagcagctgttgtgcgat attggaaaactgagaaaggaatccaacaaagtcaaagaaatttgggatgaaaacagaacaaagatcaagaaaaagaagct gatctttaaaatgaatgatgaattaaaaactctagaaaatgtccagaccctcatgcatgtaaaccttacagaggagaaga tggtcttggaatcggatccagttgaccttctcagggctgagccggtgaaagtatctcaatttggtacagaatggaaatgt tccaatatcacaggatgtgtcatggttgatgacaaaaggctgctggttgcaacatattcacttaagcgcctagaaatgta ctaa |
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Protein
| Protein ID | pfu_aug2.0_1443.1_11672.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1443.1_11672.t1 MATSNSSPFTELTLCPLCFERFKCPKTLPCLHNFCESCIGSYIASVFEKENVKCVSCPICRADVQKPQHVNTSEEWTKCL PTNHMLVSMLDAVTGFQHEIICNSCNIENKTESAVYWCADCRKALCELCERKHTYFIHGHNVVNLMKMTEIEPKALSVSV KCPRHEEKVIEAYCFDHNTPCCSSCVMITHRKCNRVEEAKNAAEEMRNSKQMVELQENFEIYRKEMGQLTDEATENVNSF KDELADIHNEITTFRSHINRQLDDIELKAKQELNALEKEHLPEMEATVQIMSGETKRAENDLMILKASVQYASDEQLLCD IGKLRKESNKVKEIWDENRTKIKKKKLIFKMNDELKTLENVQTLMHVNLTEEKMVLESDPVDLLRAEPVKVSQFGTEWKC SNITGCVMVDDKRLLVATYSLKRLEMY |
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