Gene
| Gene Model ID | pfu_aug2.0_1445.1_18336 |
|---|---|
| Locus | scaffold1445.1 : 82295 ... 114685 : - |
| To GenomeBrowser | scaffold1445.1:82295..114685 |
| Genes list of scaffold | scaffold1445.1 |
| Synonym | pfu_aug1.0_60.1_29056 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1445.1_18336.t1 | 1 | 1 | XRN_N | 1 | 256 | 0.0 | 375.1 | 0.0 | 0.0 | 374.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1445.1_18336.t1 | gi|524864790|ref|XP_005089229.1| | PREDICTED: 5'-3' exoribonuclease 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1445.1_18336.t1 | gi|755988511|ref|XP_011311873.1| | PREDICTED: 5'-3' exoribonuclease 2 homolog [Fopius arisanus] | 0.0 |
| pfu_aug2.0_1445.1_18336.t1 | gi|291242576|ref|XP_002741181.1| | PREDICTED: 5'-3' exoribonuclease 2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1445.1_18336.t1 | gi|749758222|ref|XP_011141155.1| | PREDICTED: 5'-3' exoribonuclease 2 homolog [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_1445.1_18336.t1 | gi|759079411|ref|XP_011349523.1| | PREDICTED: 5'-3' exoribonuclease 2 homolog isoform X2 [Cerapachys biroi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1445.1_18336.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1445.1_18336.t1 atgggagtaccggcgttctttcgatggttgagtaagaaatatccgtcgattctagtacactgtgtagaagagaaggcaaa ggaagtagatggtgtacagatcccagtggataccagtttacctaatccaaatgactacgagtttgataacttgtatcttg atatgaatggtattatccatccttgttgtcacccggaggataaaccagcacctaagaatgaagatgagatgatggttttg atctttgagttcatagacagaatattttctattgtacgacccaggaaggttttatacatggccattgatggagtggcacc gagagctaagatgaaccagcagagatccaggagattcagagcatcaaaagaaagcaaagagaatatagaggagatggcta gattgagggaggagctgtcagctaaaggctatcacttacccccagaaaaacctaaggaggaacactttgatagtaactgt attactcctggaaccccgttcatgtttcgcttggcagactgtctacgctattacatacatgacagattaaataatgaccc aggctggcaaaacgtcaaagtcattctgtctgatgcaaatgtaccgggggaaggtgaacataaaataatggactatatca gaagacaacgagctcagccagaccatgatgctaacacacggcattgtttatgtggagccgatgctgatttgatcatgtta gggttagccacccacgagccaaatttcacaattatcagagaggagtttgttcctaacaagccaagaccatgtaatctttg tggacaagttggtcatgaaatgaaagaatgtacaggtttacctaaagatatgtgtggagagcatgatgagctgccaaaat taatgggagaagagcaaaagttcatatttctcaggttaaatattttgagagaatatttagaaagagaattacgaatggac aatctaccgttcaaatacgattttgagagagctctagatgactgggtttttatgtgcttctttgtgggtaatgattttct cccacatttgccatcattagaaatccgtgaaggtgccatagacagattggttagactgtacaaagatgctgtcagaaaaa ctgggggtttcctgacaaacagtggtgttgtgaatttagagagagtccagttagtaatgagtgatttaggaaaagtagag gatgaaattttcaaaagaaggagagatacagagcttgaatttagaagacgggataaagaaaagaaaagaagggcaaagag atggtcagagggtcccagatgggctccaggtggtcagtttgcacctcagcctcttggtcactcacacacggtcagtaatc cacgacaggaggcgtataaaggcaggatggacgcagctaatcatgatgcagctagtcagctaaggtcattaatgactcga gatggtgatggtaatcaaaggggcgtcaaaaggaaatcagatggagacgggcagaggggtcgggaacaagaggaagagga ggaggaagagaaggagcctgatgatgaagtcaggttatgggaagatggctggaaggacagatattacaagtcaaagtttg gtgtagatgtaacagatatagacttcagacacactgtagccaaccactatgtacgaggtctgtgctgggttctcagatat tactaccagggctgtgcttcatggaagtggtactttccttatcactacgcaccatttgcctcagattttgttaatatcgg gcagctatctaacgactttgaaaagaagaccacaccttttaagccattagaacagttaatgggtgtgttcccagcagcca gtaagaaacatctaccagtcacatggcagaggctgatgtgtgatccagagtctcccatcatagatttttatcctgtggat tttaaaatagatctgaatggaaagaaatatgcatggcaaggagttgctttattaccgtttgttgatgagaagaggctgct ggcggccttggaaaatgtttatcctgatctcacaccgggagaacaggagaggaatatatggggagatgacagactatttg ttggtattagacaccctgcatacagcttttttgaaggtctatatgagggaagtcaagtcacagagggagtagatgtagat acaaagctgagccagggtatgggtggtttggtatggtgtgataatagggctgtaatgacaggagatacagtgccttcacc tttaccagcattacaaggtattccagataacagagctatatgtgtaaagttcaaggatcctcagtttgatcctgatttcc tgttcgaggcaaaggtcctaccaacggctgtaatgccagacagagtattgaagccggaggattttaacagacgtaatcct ggtcagcattggatgccgcagcttggaatgtcacgacaaagtggatatcagcaaaacaaggatatgggatcggcaatcag gatggtcagacatggtataggatcaggaggtggaggtcagtttggcaatgtgcctcctcccaactacaaccaaggaggag gaggaggaggaaggcaaagaaatcaatatggtggatatggtaacaatcagcagcagtatgataatagagggaggaaccat ggaggttctgggaatatgggttggcaaagcaatatgagaggacagcaaaacgcctacaacagcaatcaacaaagaggtta tggcggaaatcagggaggttatggcgggaatcaaggaggttacgggggcaaccaaggaggttatggatggaatcagggcg gatatggcggtaaccgtgcttacggaggtaatcaaggaggaggttatggcgggaaccagggaggttatggaggtaaccaa ggcaactacaggggaggtaacaagtacggaggtaatcaaggcggatacaacagacagaggtactag |
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Protein
| Protein ID | pfu_aug2.0_1445.1_18336.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1445.1_18336.t1 MGVPAFFRWLSKKYPSILVHCVEEKAKEVDGVQIPVDTSLPNPNDYEFDNLYLDMNGIIHPCCHPEDKPAPKNEDEMMVL IFEFIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRASKESKENIEEMARLREELSAKGYHLPPEKPKEEHFDSNC ITPGTPFMFRLADCLRYYIHDRLNNDPGWQNVKVILSDANVPGEGEHKIMDYIRRQRAQPDHDANTRHCLCGADADLIML GLATHEPNFTIIREEFVPNKPRPCNLCGQVGHEMKECTGLPKDMCGEHDELPKLMGEEQKFIFLRLNILREYLERELRMD NLPFKYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVRLYKDAVRKTGGFLTNSGVVNLERVQLVMSDLGKVE DEIFKRRRDTELEFRRRDKEKKRRAKRWSEGPRWAPGGQFAPQPLGHSHTVSNPRQEAYKGRMDAANHDAASQLRSLMTR DGDGNQRGVKRKSDGDGQRGREQEEEEEEEKEPDDEVRLWEDGWKDRYYKSKFGVDVTDIDFRHTVANHYVRGLCWVLRY YYQGCASWKWYFPYHYAPFASDFVNIGQLSNDFEKKTTPFKPLEQLMGVFPAASKKHLPVTWQRLMCDPESPIIDFYPVD FKIDLNGKKYAWQGVALLPFVDEKRLLAALENVYPDLTPGEQERNIWGDDRLFVGIRHPAYSFFEGLYEGSQVTEGVDVD TKLSQGMGGLVWCDNRAVMTGDTVPSPLPALQGIPDNRAICVKFKDPQFDPDFLFEAKVLPTAVMPDRVLKPEDFNRRNP GQHWMPQLGMSRQSGYQQNKDMGSAIRMVRHGIGSGGGGQFGNVPPPNYNQGGGGGGRQRNQYGGYGNNQQQYDNRGRNH GGSGNMGWQSNMRGQQNAYNSNQQRGYGGNQGGYGGNQGGYGGNQGGYGWNQGGYGGNRAYGGNQGGGYGGNQGGYGGNQ GNYRGGNKYGGNQGGYNRQRY |
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