Gene
| Gene Model ID | pfu_aug2.0_1445.1_18339 |
|---|---|
| Locus | scaffold1445.1 : 145771 ... 156244 : - |
| To GenomeBrowser | scaffold1445.1:145771..156244 |
| Genes list of scaffold | scaffold1445.1 |
| Synonym | pfu_aug1.0_2447.1_66335 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-3- partial | GO:0006821 GO:0007417 GO:0016020 GO:0016934 GO:0043200 GO:0045664 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1445.1_18339.t1 | 2 | 1 | Neur_chan_memb | 140 | 228 | 7.3e-33 | 114.4 | 3.2e-29 | 4.7e-25 | 88.8 |
| pfu_aug2.0_1445.1_18339.t1 | 2 | 2 | Neur_chan_memb | 259 | 306 | 7.3e-33 | 114.4 | 9.5e-11 | 1.4e-06 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1445.1_18339.t1 | gi|701306005|ref|XP_010013750.1| | PREDICTED: glycine receptor subunit alpha-3-like, partial [Nestor notabilis] | 1.4013e-45 |
| pfu_aug2.0_1445.1_18339.t1 | gi|410914369|ref|XP_003970660.1| | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_1445.1_18339.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1445.1_18339.t1 atgatagtcaggacaataaaagtcaaaatgctcaacaaaggaaagaaaaagcacagatcatggaaacaactgagagcgac agatccgcgtcgtacttggattatacttctatctttcgacgcaaacggtcatttgaatacctcactgtatgacaagcgtg atgatttcatcttacacataactaacttccctttcatgagtagcagcattccgccttctcttgcttatggcgtttttgtt tcccagctcatatggatcgcattcagtaatcacagtgaccctttattacgcgaggaacagattttgtcattattcaggga atacagctctaaaacgccaccaatagaaggagttaactacacatgcgtcagtctgaagtttatgttggagagaaaaaggg gatattacatcatacaagtatacattccaagtatcctcatctgcatactctcatgggtcaacttttggttggatgtcgat gctgttcccgctaggatatctgttggcttgttgaccgttctaactatggccacacagatagctactgccctagacagtcc acagagtgtttcctacatcaaagctctagatgtgtggttggctgcctgtctattttttgtatttgccgctttgattgaat ttgcatatgttaatgtgacctccagagttcaacatcggagggcccaatcagatatcttggatttgctgacttcctcaaca gagttcatagaccggagtagtaaggacaagaaagatgagatatggcacaagttcatctccagcatcgtagagaatatcta taaagatgaatatcaacaaagatacacctctagcgacaaagagaaggccaggagagtcgacaagatctccaggattttat ttcctgctatgttcttactgttcaacgttgtatactggaccacgtatcttgtatgggaacctgttcaggatctataa |
|
Protein
| Protein ID | pfu_aug2.0_1445.1_18339.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1445.1_18339.t1 MIVRTIKVKMLNKGKKKHRSWKQLRATDPRRTWIILLSFDANGHLNTSLYDKRDDFILHITNFPFMSSSIPPSLAYGVFV SQLIWIAFSNHSDPLLREEQILSLFREYSSKTPPIEGVNYTCVSLKFMLERKRGYYIIQVYIPSILICILSWVNFWLDVD AVPARISVGLLTVLTMATQIATALDSPQSVSYIKALDVWLAACLFFVFAALIEFAYVNVTSRVQHRRAQSDILDLLTSST EFIDRSSKDKKDEIWHKFISSIVENIYKDEYQQRYTSSDKEKARRVDKISRILFPAMFLLFNVVYWTTYLVWEPVQDL |
|