Gene
| Gene Model ID | pfu_aug2.0_14660.1_03186 |
|---|---|
| Locus | scaffold14660.1 : 1 ... 2644 : + |
| To GenomeBrowser | scaffold14660.1:1..2644 |
| Genes list of scaffold | scaffold14660.1 |
| Synonym | pfu_aug1.0_5553.1_09142 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calmodulin | GO:0000922 GO:0002027 GO:0005509 GO:0005513 GO:0005634 GO:0005813 GO:0005876 GO:0010880 GO:0019901 GO:0019904 GO:0021762 GO:0030017 GO:0030801 GO:0031432 GO:0031996 GO:0031997 GO:0032465 GO:0032516 GO:0034704 GO:0035307 GO:0043274 GO:0044325 GO:0051343 GO:0055117 GO:0060316 GO:0070062 GO:0072542 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_14660.1_03186.t1 | 2 | 1 | EF-hand_1 | 11 | 39 | 3.7e-10 | 38.3 | 4.4e-12 | 1.1e-08 | 33.7 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 1 | EF-hand_6 | 11 | 40 | 1.4e-08 | 33.8 | 7.0e-11 | 1.7e-07 | 30.4 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 1 | EF-hand_8 | 11 | 31 | 7.2e-07 | 28.7 | 4.4e-07 | 0.0011 | 18.5 |
| pfu_aug2.0_14660.1_03186.t1 | 1 | 1 | EF-hand_7 | 12 | 58 | 9.7e-08 | 32.0 | 5.1e-11 | 1.3e-07 | 31.6 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 1 | EF-hand_5 | 12 | 36 | 1.2e-06 | 27.5 | 5.2e-10 | 1.3e-06 | 27.4 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 2 | EF-hand_8 | 27 | 58 | 7.2e-07 | 28.7 | 2.7e-05 | 0.066 | 12.8 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 2 | EF-hand_6 | 44 | 53 | 1.4e-08 | 33.8 | 0.15 | 370.0 | 1.4 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 2 | EF-hand_1 | 47 | 58 | 3.7e-10 | 38.3 | 0.017 | 42.0 | 3.7 |
| pfu_aug2.0_14660.1_03186.t1 | 2 | 2 | EF-hand_5 | 48 | 58 | 1.2e-06 | 27.5 | 1.1 | 2600.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_14660.1_03186.t1 | gi|70931007|ref|XP_737288.1| | hypothetical protein, partial [Plasmodium chabaudi chabaudi] | 9.0e-18 |
| pfu_aug2.0_14660.1_03186.t1 | gi|2388891|emb|CAA75057.1| | calmodulin [Solanum lycopersicum] | 9.0e-18 |
| pfu_aug2.0_14660.1_03186.t1 | gi|294887727|ref|XP_002772218.1| | calmodulin, putative [Perkinsus marinus ATCC 50983] | 1.0e-17 |
| pfu_aug2.0_14660.1_03186.t1 | gi|566150460|ref|XP_006369409.1| | calmodulin-like protein 6a [Populus trichocarpa] | 1.0e-17 |
| pfu_aug2.0_14660.1_03186.t1 | gi|197129704|gb|ACH46202.1| | putative calmodulin variant 1 [Taeniopygia guttata] | 1.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_14660.1_03186.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14660.1_03186.t1 ggaactatactcgatgaagataaaatatcagaattaaaggatgtgtttgacgagtttgacagagacggggacgggatcat aacaacacgggagctaggtactgtcatggcgtcactggggatgtgtccgacagaggcggagctacaggacatcatcaatc acgtggactctgacg |
|
Protein
| Protein ID | pfu_aug2.0_14660.1_03186.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_14660.1_03186.t1 GTILDEDKISELKDVFDEFDRDGDGIITTRELGTVMASLGMCPTEAELQDIINHVDSD |
|