Gene
| Gene Model ID | pfu_aug2.0_1469.1_31700 |
|---|---|
| Locus | scaffold1469.1 : 39112 ... 63565 : - |
| To GenomeBrowser | scaffold1469.1:39112..63565 |
| Genes list of scaffold | scaffold1469.1 |
| Synonym | pfu_aug1.0_2761.1_15931 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1469.1_31700.t1 | 4 | 1 | RRM_1 | 26 | 68 | 2.8e-30 | 103.7 | 0.0049 | 14.0 | 5.3 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 1 | RRM_5 | 26 | 72 | 3.8e-20 | 71.4 | 0.00011 | 0.31 | 10.9 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 1 | RRM_6 | 27 | 63 | 5.1e-23 | 80.8 | 0.013 | 40.0 | 4.2 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 2 | RRM_6 | 300 | 370 | 5.1e-23 | 80.8 | 4.8e-09 | 1.4e-05 | 24.9 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 2 | RRM_1 | 302 | 370 | 2.8e-30 | 103.7 | 1.0e-09 | 3.1e-06 | 26.7 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 2 | RRM_5 | 319 | 370 | 3.8e-20 | 71.4 | 2.2e-08 | 6.4e-05 | 22.7 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 3 | RRM_1 | 402 | 468 | 2.8e-30 | 103.7 | 1.4e-17 | 4.3e-14 | 51.9 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 3 | RRM_6 | 402 | 467 | 5.1e-23 | 80.8 | 7.2e-12 | 2.1e-08 | 33.9 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 3 | RRM_5 | 416 | 469 | 3.8e-20 | 71.4 | 8.1e-08 | 0.00024 | 20.8 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 4 | RRM_6 | 481 | 544 | 5.1e-23 | 80.8 | 2.8e-05 | 0.084 | 12.8 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 4 | RRM_1 | 482 | 544 | 2.8e-30 | 103.7 | 2.6e-06 | 0.0078 | 15.8 |
| pfu_aug2.0_1469.1_31700.t1 | 4 | 4 | RRM_5 | 495 | 549 | 3.8e-20 | 71.4 | 5.7e-06 | 0.017 | 14.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1469.1_31700.t1 | gi|642931869|ref|XP_008196762.1| | PREDICTED: protein split ends isoform X1 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_1469.1_31700.t1 | gi|642931871|ref|XP_008196763.1| | PREDICTED: protein split ends isoform X2 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_1469.1_31700.t1 | gi|525020072|ref|XP_005057555.1| | PREDICTED: msx2-interacting protein isoform X1 [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_1469.1_31700.t1 | gi|564266422|ref|XP_006272032.1| | PREDICTED: msx2-interacting protein-like isoform X1 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1469.1_31700.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1469.1_31700.t1 atgttaattcgcctgggacgggttgtaacatatctttcccacatatcatggcagactggttgtcattcagtatggatatt tacgctgtacggaaaaatccagagtgtgaaattacataaaaaggaaagtgaagaaggattatcagcgactgttgcattcg gggatataaaatctgcatcaaaagcttacggcagtgaaaaccggatcgaggggaacctactaacaaccgaatacagtgaa ggatccgtttccggtagtgcagtaacacgcattgtcgaaccaccgcctgttcgcccctccagctattctagacaatttcc aagcaggagtaaagggtctgaggacggtgagagttttgaaggtcgtgacttccactacagccccggtcaatacgagggta gatactcccaaggtggaggaggtgggggaggcggatatggtgaggaggggtaccagagggggcgacccagggagagattc gttgccaggggagctttcaaacagtatgatgtgagaggagggtaccatggaagaccatcctacaaggaccagtcctcgca agacggatttgagaaaccgaaagttccgcagtcccccgcacattccacatcccatagcagcagtcgtcatagcagcaaac gtaagaggaagaagaagaagcatgtgtcgaggtcagagagtagaagtaggtcaaggtcgtcgtcaagtagcagctcgagt cgatcatcgtcagacagcagcggatcaagatctagcagcggttcgagtcgaagcagttcccataaacggaagtctcaatc taggtctggacatatcaagtcataccgtacagagtcacaggattctatagggagtgaccatggcggaagcaaatctgacc tggataaaactcgcggagtgctcattaagaatttaccactcagatccagtgatacaagtttgagagacggcctctttcac gatttcaagaagtacggaaaaataaatgctgtgctggtaacaggacagggtgaagatcgttatgctatagtcagctatcg caaaaccgaagatgcggaaaaagccatccacaatacacagggcaaagttttctttggaatgaaaattcggacatcgctta ctgatggaatagaagtagacgataacgaacttcgacctcctgaagccgaactagacgaacaccatccaaaagctactcgc acattgtttgtgggaaatctggaaaaagacatctccaacgaagaattgagggagagattttccaaattcggaacaatcct cgacatagatgtaaaacggcagggggccatctcagcgtatgcctttgtacagtttactgacattagcagtgttgttaaag ttctaagagagttagaaggagaaatctgggggtctatgaaactcaagctgggctttgggaagagcatgcccactacatgt gtatggttagacaatgttgaccagactgtacaggagaatttcctctgccgacagttcatgcgctacggccaagtgtcaca tggtatcatagataggatacgtggacgagcgttggtcttctttgtcaacctggagatggcacagtacgcactcaacgaga tgaggaaccgcatacttaacaatcgtaaaattatcattgactttgctagtcgtgactgtcagacagagttttacgagaag atggagaagactggccagctaaagcccgggatgagacccgacgagagacgtggctggatgtataatcgtcagggccccga tgggcagtgggaggcaacatatgacaacagagggagtttctacaagttcccctaccatcaaggtcccccacagttcaggg ggcgtggccgaggatggggtggatccaggggtggatttaacaaagagggattctcaggagaagagtacagaagaacaagg tcttacgaggaatacggtagatatcccggaggtccaccagaaggcgactttgatcaagacttgcgtgcatatcagcgaga aagacgagaacatgggagtccgagtccctctcagtacagtgacgacccctatggtgaacgctatggaaaatatttcaagt atcctgaatcgtaccgtagtggaagtcccgttagtgaaagagcttatgaagactttgaatacggaaagccgcgccctgat gaaaaatactttaaggagcgttatccagaaatggaatttcatgatcgtcatggatactcccctgagggtcgaagttggag ccggtctccgacattaggaatgccgccaaaagattcatacggacgtaatacgccaccgacacctatggacgatgaaatgc acgatttctcatcacatgataatagccctgaaggagaggcaatcggaaagtacagtgaagtgaaagagaaacgtaggaaa tcaggggatgattttatgataaatgaggcagatatcgctgaaataaaccgtgcttcaaaatatcatgcgggttacaggaa gggacaggaatctccgtggcgtgatgaacggtacgatagaaaaagatcttatgacgaatcattctctaatgaatttgggc agtttgaacaatctccgcacaaacttgatagacaaatcagtcgtggaagtaaatctagcatagctgactctcgacgtgat atatgtcaaaaagtgcggaaaattgagtcgaaaattacggaaagattgaaaaaaggaaaagaaagtagtccaagttcagg cagtagcgagtctggtgaattaactgaaggagaattaactaagcttcagagtgagaagcagttgttgttggacaagttaa aaagtttagaaaaagattcaagtaatagtgacttggaagaaggaatgattgaagaagaccgaaggaaaagttcgaaacgt ccgagacttgaatctgaaaatccttgggaaaagtcatcgaaaaatgaacttacaaatgcgaaaggacatcctaaaaaatc tgtgtcatatgactcgactttaagtttgagaaagcaaatggatcatctacgtaaaatagatgaaacaaagaaaacggagg aaaagaatagaaattatgcatcaaatgcatcaaggactagtgtggacgcagagggaagtgaggctgaagaatttacagcc atgctatcccccaaggaaatatctgcctccttcaaaaggcggaaaaagcacgaaactgctgaagaaaaacgatcatatcg attaaaacgcggcgatgaggaaatgagtagtgacaatgaggaaaataaaaacccttcaaggacagattcattatcgtcga atcccgttttccgtcgtatgtccagtggtcattcgtccccaaggacgcccgtagcgccacatggacacgaccctagtggt gatgttttacggcatagtgaatcggatttatctgctaatgaaggacattcttcatttacagatgattcaaagaagaaatc ggagagtgcgactaaaaatcacggacatagatctaaacacagacaaaaggaagaacatcagcctacggtcatacctctag gtgatgatgagcctaattcagagttatccgatcccagaagtcggaatgtgatttctgaacaaatgtcattacctctgcct caatttgcggaattagacttaaacgttatgatgtcaccagacgctgaaaactccgaggagagaatgaaaagtgagtcgcc ctgtttctctccaccgagtagtgggagtaaaaacactaactcaccgcagcgctcacctagtgagtcggtatcggcagact cgcaggagccgatacaaccagagtatattccagaggaaggcactacgaacgaagtaccttctgaagatcaattactcgga aaaactaaggagaaaagtgattttgattcagatgatggattttcagacaatagtgatcatatggataattttgaatccga tgataaactttctttagaggaaagaataagaaggttggacgaaaagttacgcgccgtaccgactccctctactagtacaa aaccagtgtcggacattagtgcgtctttatcaataaactcaggatcaaagggtgaagcatgtaactcatccttagcaaga acagctttgtattctaaatttaggattagtaaacggcaagacgcatcaggtaacggaatagacaataaggcagaaggatc tgacattacgcacactgtggtaccacggaaaattagcattttcgaccaggatgctaaaagacttgaacaaatctcggaaa aatattctccaaagacaaatttgtctagcgtggaggacacacatgtctccatgcccgttatgacaaaagctgccgtcaag gaaatgccgttagctactttaccgggttcgctgacgggtcgcctcggcaattcagctgcgtttccaactctatctgtcaa taccaccacagctaatcagacaggattaaaacctgaggaaatgttttctagtcccacttcagaaatctcaacccctagtc cggcttttaatagctctcaggaaaaacctatatggcaaactgaaaactttactggttcaccgcatttggtagagcctgca gttactgcttactccttggtgccaaaaacaaacttcagtgaacaaataaacaactcaggaaatttacattcgaacagcag taaagaggatttaataagtaaaccatttgtgactccggcagttaagaaacaaatgggattatctaaccttagtgatgcta attctgtgtttacgaacagtgttgtgcatgaggaaaaattacattctccaaaagaatctgagaaattatcgccaaaaggc gatgctaaatcctcacccaatagaaatgaacaaaccgtgtcaccaaaactctcaccaaagccgttttcaaagatggactc taatgttaattcgtttgtagaaacaaattccagtatcaaatcagatctgatctcggacttacatacaagtgatagtaaca aattaacaaattccatggaaaaagtcaactcacatagtgttcaatctgtaaatgaaccaatggaggaagatacaccaagt attctatgtgatacaaaatcaaatagtgcaccaaggacgaaaaatagtgatccggatttaacgttatcaaatcacgtttc ggactctcatgttaagaaaaccacagaaaataaggaaaattcattgacgtctaaatttagtgaaagctgtgattcactcg cagattctatagtgactaaacaggatttaccatctacttcagtgacgagggatagcagtatttctaaagtcaatggaagc aaggatcataataagaaagtgaatgaaactgttgaagatgtgttgggacttaatacgccagtgttaggaaaacgcaaagc cgaactagacgaaaaacctaaaagtagcagtaaagataagagcagtagtaaagagacagttccgagtgtgaacatggcat ccgagtcagaattatccgagaaggatgacaaaacacaagagccagatgtgaaaaaagtcaaactcgcgaaatccgagtca tcaagctctgaaggggagaaggagaagaataatggcgagaagaaggacaaagacagggacggtagttctagtaaaggaag tgccagcaagacttcttctggtagtggtgaaaagacaggcagtagcagcaagtctagcagtaaatcccacgacaaatctc aagctgccagtaaatcgtcgtcagttaaagcagaggacaaggtcataaagccgagtactgataaaaacaaatctagcaag tcagaggataagagcaaggcagacggcaagtcagaaagcaaaagtaagagtgatgataaaactaagacggagaaatcaag tgatggaaccacaaagaagcaaagtgacaaaaaatcagaacataagaaggagcataaatcgtcatccagtgctaagactt ctgatgtgacgaaagtgaaagacaaagataaaagtgctaaagatggacagaaaggaaaatcaaaagatgatcaggctact ggatctaagtctgtgaagtctgagaaaacaggacatggaaattctgacaagtcaacaaagatggtgtga |
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Protein
| Protein ID | pfu_aug2.0_1469.1_31700.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1469.1_31700.t1 MLIRLGRVVTYLSHISWQTGCHSVWIFTLYGKIQSVKLHKKESEEGLSATVAFGDIKSASKAYGSENRIEGNLLTTEYSE GSVSGSAVTRIVEPPPVRPSSYSRQFPSRSKGSEDGESFEGRDFHYSPGQYEGRYSQGGGGGGGGYGEEGYQRGRPRERF VARGAFKQYDVRGGYHGRPSYKDQSSQDGFEKPKVPQSPAHSTSHSSSRHSSKRKRKKKKHVSRSESRSRSRSSSSSSSS RSSSDSSGSRSSSGSSRSSSHKRKSQSRSGHIKSYRTESQDSIGSDHGGSKSDLDKTRGVLIKNLPLRSSDTSLRDGLFH DFKKYGKINAVLVTGQGEDRYAIVSYRKTEDAEKAIHNTQGKVFFGMKIRTSLTDGIEVDDNELRPPEAELDEHHPKATR TLFVGNLEKDISNEELRERFSKFGTILDIDVKRQGAISAYAFVQFTDISSVVKVLRELEGEIWGSMKLKLGFGKSMPTTC VWLDNVDQTVQENFLCRQFMRYGQVSHGIIDRIRGRALVFFVNLEMAQYALNEMRNRILNNRKIIIDFASRDCQTEFYEK MEKTGQLKPGMRPDERRGWMYNRQGPDGQWEATYDNRGSFYKFPYHQGPPQFRGRGRGWGGSRGGFNKEGFSGEEYRRTR SYEEYGRYPGGPPEGDFDQDLRAYQRERREHGSPSPSQYSDDPYGERYGKYFKYPESYRSGSPVSERAYEDFEYGKPRPD EKYFKERYPEMEFHDRHGYSPEGRSWSRSPTLGMPPKDSYGRNTPPTPMDDEMHDFSSHDNSPEGEAIGKYSEVKEKRRK SGDDFMINEADIAEINRASKYHAGYRKGQESPWRDERYDRKRSYDESFSNEFGQFEQSPHKLDRQISRGSKSSIADSRRD ICQKVRKIESKITERLKKGKESSPSSGSSESGELTEGELTKLQSEKQLLLDKLKSLEKDSSNSDLEEGMIEEDRRKSSKR PRLESENPWEKSSKNELTNAKGHPKKSVSYDSTLSLRKQMDHLRKIDETKKTEEKNRNYASNASRTSVDAEGSEAEEFTA MLSPKEISASFKRRKKHETAEEKRSYRLKRGDEEMSSDNEENKNPSRTDSLSSNPVFRRMSSGHSSPRTPVAPHGHDPSG DVLRHSESDLSANEGHSSFTDDSKKKSESATKNHGHRSKHRQKEEHQPTVIPLGDDEPNSELSDPRSRNVISEQMSLPLP QFAELDLNVMMSPDAENSEERMKSESPCFSPPSSGSKNTNSPQRSPSESVSADSQEPIQPEYIPEEGTTNEVPSEDQLLG KTKEKSDFDSDDGFSDNSDHMDNFESDDKLSLEERIRRLDEKLRAVPTPSTSTKPVSDISASLSINSGSKGEACNSSLAR TALYSKFRISKRQDASGNGIDNKAEGSDITHTVVPRKISIFDQDAKRLEQISEKYSPKTNLSSVEDTHVSMPVMTKAAVK EMPLATLPGSLTGRLGNSAAFPTLSVNTTTANQTGLKPEEMFSSPTSEISTPSPAFNSSQEKPIWQTENFTGSPHLVEPA VTAYSLVPKTNFSEQINNSGNLHSNSSKEDLISKPFVTPAVKKQMGLSNLSDANSVFTNSVVHEEKLHSPKESEKLSPKG DAKSSPNRNEQTVSPKLSPKPFSKMDSNVNSFVETNSSIKSDLISDLHTSDSNKLTNSMEKVNSHSVQSVNEPMEEDTPS ILCDTKSNSAPRTKNSDPDLTLSNHVSDSHVKKTTENKENSLTSKFSESCDSLADSIVTKQDLPSTSVTRDSSISKVNGS KDHNKKVNETVEDVLGLNTPVLGKRKAELDEKPKSSSKDKSSSKETVPSVNMASESELSEKDDKTQEPDVKKVKLAKSES SSSEGEKEKNNGEKKDKDRDGSSSKGSASKTSSGSGEKTGSSSKSSSKSHDKSQAASKSSSVKAEDKVIKPSTDKNKSSK SEDKSKADGKSESKSKSDDKTKTEKSSDGTTKKQSDKKSEHKKEHKSSSSAKTSDVTKVKDKDKSAKDGQKGKSKDDQAT GSKSVKSEKTGHGNSDKSTKMV |
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