Gene
| Gene Model ID | pfu_aug2.0_1478.1_28310 |
|---|---|
| Locus | scaffold1478.1 : 84608 ... 100575 : - |
| To GenomeBrowser | scaffold1478.1:84608..100575 |
| Genes list of scaffold | scaffold1478.1 |
| Synonym | pfu_aug1.0_10229.1_68158 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1478.1_28310.t1 | 2 | 1 | G-patch_2 | 35 | 35 | 4.0e-23 | 81.0 | 0.76 | 3700.0 | -2.2 |
| pfu_aug2.0_1478.1_28310.t1 | 3 | 1 | KOW | 36 | 45 | 3.5e-07 | 29.6 | 2.5 | 12000.0 | -3.8 |
| pfu_aug2.0_1478.1_28310.t1 | 2 | 2 | G-patch_2 | 122 | 190 | 4.0e-23 | 81.0 | 8.2e-27 | 4.0e-23 | 81.0 |
| pfu_aug2.0_1478.1_28310.t1 | 1 | 1 | G-patch | 149 | 187 | 7.8e-09 | 35.1 | 3.5e-12 | 1.7e-08 | 34.0 |
| pfu_aug2.0_1478.1_28310.t1 | 3 | 2 | KOW | 213 | 244 | 3.5e-07 | 29.6 | 1.5e-06 | 0.0074 | 15.9 |
| pfu_aug2.0_1478.1_28310.t1 | 3 | 3 | KOW | 380 | 403 | 3.5e-07 | 29.6 | 5.8e-08 | 0.00029 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1478.1_28310.t1 | gi|573874202|ref|XP_006625509.1| | PREDICTED: G patch domain and KOW motifs-containing protein-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1478.1_28310.t1 | gi|734634143|ref|XP_010745593.1| | PREDICTED: G patch domain and KOW motifs-containing protein [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_1478.1_28310.t1 | gi|554840660|ref|XP_005930755.1| | PREDICTED: G patch domain and KOW motifs-containing protein-like [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_1478.1_28310.t1 | gi|583998234|ref|XP_006794202.1| | PREDICTED: G patch domain and KOW motifs-containing protein-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_1478.1_28310.t1 | gi|542216595|ref|XP_003439171.2| | PREDICTED: G patch domain and KOW motifs-containing protein-like [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1478.1_28310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1478.1_28310.t1 atggatagaaaaggactaacttttggctttacaaagaaagttgagaccaaaaaactaaataaatcaagtctgaatgaagt aaaagaagaagaagatacacatgatgtcgtgacaagtgttgaggataagaaagtcaaagggacaaaacctgagaagaagg ttcaagagtatgtgatccctctaatacgtcagaacagatggcagcagtcagggaaagatggaggggatgttgaaaatcaa gcagttcaggagctccttgatgatgcagccaaacagaatgacgagtggcaggagagaggaacagttaggtctgacttatc tattccactgttaatgcagaaccaagtacctgagggttatgaaacagatgataggttggatgtctctcttagacctaatg agccagaggaagcagattatgatgaagtgcctatagaacagtatggaatggctctgctgaaaggaatgggatggaaagaa ggtgatggtattggcaaaaataacaaagctgttgcaccagtagtggctacactaaggccaaagggtatgggacttggtgc agataggtcacagattaaacagttaaatcacacgtctaacaagaaagatgacaatgaagacgagttagtgttgaaaaaag ggagtcattgtgtgatagttaaaggaagcaacagggatttgtatggtgtgatagaaggacttgatgaagataattgtagg gtgatggtcaagctggcacttagtggtaaaataatatcacagagtcaatacggcattaaactggtcactgcaaaggaata taagaaatactcaaagtatctcaagggactcgatgaagataattgtagggtgatggtcaagctggcacttagtggtaaaa taatatcacagagtcaatatggcattaaactaagacacagcaatggtcatagctctcatgctacaccttgggtccgtcca cacatcaaagttagacttgtagacaaaaattacaaaaaaggcagatattataaagaaaaggtgacaatattagatatggc tgggttggataattgtgtatgtaaaactgatgatggcaaagtgttagatgatatacctgtttcatccctggagactgtga taccaaaatctgatacagggcatgttcttattgtgaatggaaagcataaaggacaggtagcacaaattatgaagaaggac aagaaatcctgtcaagcagctgtgcagcttttatctgagagggacataattctcaagttgtcgtatgatgatatatgtga atacacaggggacatcaatgatctttttgaatattga |
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Protein
| Protein ID | pfu_aug2.0_1478.1_28310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1478.1_28310.t1 MDRKGLTFGFTKKVETKKLNKSSLNEVKEEEDTHDVVTSVEDKKVKGTKPEKKVQEYVIPLIRQNRWQQSGKDGGDVENQ AVQELLDDAAKQNDEWQERGTVRSDLSIPLLMQNQVPEGYETDDRLDVSLRPNEPEEADYDEVPIEQYGMALLKGMGWKE GDGIGKNNKAVAPVVATLRPKGMGLGADRSQIKQLNHTSNKKDDNEDELVLKKGSHCVIVKGSNRDLYGVIEGLDEDNCR VMVKLALSGKIISQSQYGIKLVTAKEYKKYSKYLKGLDEDNCRVMVKLALSGKIISQSQYGIKLRHSNGHSSHATPWVRP HIKVRLVDKNYKKGRYYKEKVTILDMAGLDNCVCKTDDGKVLDDIPVSSLETVIPKSDTGHVLIVNGKHKGQVAQIMKKD KKSCQAAVQLLSERDIILKLSYDDICEYTGDINDLFEY |
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