Gene
| Gene Model ID | pfu_aug2.0_1479.1_31708 |
|---|---|
| Locus | scaffold1479.1 : 122676 ... 145155 : + |
| To GenomeBrowser | scaffold1479.1:122676..145155 |
| Genes list of scaffold | scaffold1479.1 |
| Synonym | pfu_aug1.0_83662.1_27836 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1479.1_31708.t1 | 3 | 1 | zf-CW | 28 | 37 | 2.8e-09 | 36.5 | 0.98 | 2400.0 | -1.7 |
| pfu_aug2.0_1479.1_31708.t1 | 1 | 1 | HMG_box | 306 | 373 | 2.7e-17 | 62.7 | 2.1e-20 | 5.1e-17 | 61.9 |
| pfu_aug2.0_1479.1_31708.t1 | 2 | 1 | HMG_box_2 | 306 | 365 | 1.1e-08 | 35.2 | 4.5e-12 | 1.1e-08 | 35.2 |
| pfu_aug2.0_1479.1_31708.t1 | 3 | 2 | zf-CW | 342 | 349 | 2.8e-09 | 36.5 | 0.18 | 440.0 | 0.6 |
| pfu_aug2.0_1479.1_31708.t1 | 2 | 2 | HMG_box_2 | 424 | 431 | 1.1e-08 | 35.2 | 5.2 | 13000.0 | -3.4 |
| pfu_aug2.0_1479.1_31708.t1 | 3 | 3 | zf-CW | 444 | 490 | 2.8e-09 | 36.5 | 1.1e-12 | 2.8e-09 | 36.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1479.1_31708.t1 | gi|676482588|ref|XP_009062751.1| | hypothetical protein LOTGIDRAFT_167034 [Lottia gigantea] | 2.0e-39 |
| pfu_aug2.0_1479.1_31708.t1 | gi|196016573|ref|XP_002118138.1| | hypothetical protein TRIADDRAFT_17959 [Trichoplax adhaerens] | 2.0e-11 |
| pfu_aug2.0_1479.1_31708.t1 | gi|595774940|ref|XP_007266013.1| | hypothetical protein FOMMEDRAFT_28113 [Fomitiporia mediterranea MF3/22] | 3.0e-11 |
| pfu_aug2.0_1479.1_31708.t1 | gi|187469185|gb|AAI66978.1| | Sox17 protein [Rattus norvegicus] | 6.0e-11 |
| pfu_aug2.0_1479.1_31708.t1 | gi|512852274|ref|XP_004887511.1| | 7.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_1479.1_31708.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1479.1_31708.t1 atgtcatcaaacatgagtgacggcaaagtatttgatgtgcttacatcgtctgatcttggactggacttgagtgacaaaga ggatgatctatggagttgtatgtcatctcctaaagacttgtgtttcacacacgactcaatcttaagtcttgcgaacaaag attctgacgatgaagacactaaagaggattgtggtccaataggccaaatcagctcggacggaagtgttgatgacgatatg atgatggacatagagagagcatgtgcagagaaacaggaagatgatgtttcaagggaagacgaaaatacatggcagtttct tcttcatgatgaactgaatgaccttgacattcaaactgaagatattgatgaagtaaggagtcgtctacaatttttagcga ctttaattcctacggacttactagatgatcaaagatcggtggatgaactgaatgaccttgacattcaaactgaagatatt gatgaaataaggaatcgtctacactttttagcgactttaattcctacggacttactagatgatcaaagatcggtgacgac gatcattcgcggggcatcttgttacatacgacgactgaaccgctgtcttccggatcatgatacagagaaattcacctctt gtccaantacccttcccgacgacgacaaacaaatcaaggcacaggagagtgaatcagagactgtctccagcagtcgaaag aattcggactccactgataccgacatcgacctgtcatttaatgcagacgatgacaatgtcttcctagattgtggcaatcc tgatgatgtaaaaggaaacatgatattgtctgctgatgaaccggattctacaacggaaaggaaagctttgagaaggaata gagacagaaaaaggagaggggattcaggtagtttacggagaccgaaaaacggattcattcgtttttccgtggaatacaga aagcgcttagcccaacaacgaccaaatgttgacaatagagaggtctcaaagatgctgggtgccaagtggcggagaatgag ccaggaagagaaagaaccgtacgagacggaatttcgaaacgacattgaggatctgaagaagaggcaccctgaatggcgtt atgctccaatgaagcggctcagtcacgaccagctggaaccaatgccaagcagactccgaccacgtgacaaactaaagaga aagtttccggtttccattgcaaagggcatacaactccctcgactgtcccctccaaagacaaagagtgctacaacgaagaa aagaggaaaaccaaaaagggacagaaacaataaaaccttactcggattccgttggatgcaatgctgtgtctgtttaaaat ggagatacgtacctttcttcagtaacacgccgaggaaggagtccaattctttttggttttgccaattgaatcccgatctt tcatgcaattcttgtttcgtgaaggaggattggagagtacttgttagacatcttgcaagcggaagtgacgtcacacagac gttgtcaacatcgtcttgttcattgcttaatggaaagaaattttggtag |
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Protein
| Protein ID | pfu_aug2.0_1479.1_31708.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1479.1_31708.t1 MSSNMSDGKVFDVLTSSDLGLDLSDKEDDLWSCMSSPKDLCFTHDSILSLANKDSDDEDTKEDCGPIGQISSDGSVDDDM MMDIERACAEKQEDDVSREDENTWQFLLHDELNDLDIQTEDIDEVRSRLQFLATLIPTDLLDDQRSVDELNDLDIQTEDI DEIRNRLHFLATLIPTDLLDDQRSVTTIIRGASCYIRRLNRCLPDHDTEKFTSCPXTLPDDDKQIKAQESESETVSSSRK NSDSTDTDIDLSFNADDDNVFLDCGNPDDVKGNMILSADEPDSTTERKALRRNRDRKRRGDSGSLRRPKNGFIRFSVEYR KRLAQQRPNVDNREVSKMLGAKWRRMSQEEKEPYETEFRNDIEDLKKRHPEWRYAPMKRLSHDQLEPMPSRLRPRDKLKR KFPVSIAKGIQLPRLSPPKTKSATTKKRGKPKRDRNNKTLLGFRWMQCCVCLKWRYVPFFSNTPRKESNSFWFCQLNPDL SCNSCFVKEDWRVLVRHLASGSDVTQTLSTSSCSLLNGKKFW |
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