Gene
| Gene Model ID | pfu_aug2.0_149.1_30293 |
|---|---|
| Locus | scaffold149.1 : 327240 ... 329055 : + |
| To GenomeBrowser | scaffold149.1:327240..329055 |
| Genes list of scaffold | scaffold149.1 |
| Synonym | pfu_aug1.0_5987.1_23924 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_149.1_30293.t1 | 4 | 1 | zf-B_box | 10 | 39 | 4.9e-08 | 32.7 | 0.013 | 20.0 | 5.2 |
| pfu_aug2.0_149.1_30293.t1 | 3 | 1 | zf-C3HC4_3 | 11 | 64 | 3.7e-07 | 29.7 | 2.5e-10 | 3.7e-07 | 29.7 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 1 | zf-RING_2 | 12 | 60 | 5.3e-09 | 35.7 | 3.6e-12 | 5.3e-09 | 35.7 |
| pfu_aug2.0_149.1_30293.t1 | 2 | 1 | zf-RING_5 | 12 | 61 | 4.0e-07 | 29.6 | 2.7e-10 | 4.0e-07 | 29.6 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 1 | zf-C3HC4 | 13 | 59 | 4.6e-08 | 32.5 | 3.1e-11 | 4.6e-08 | 32.5 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 1 | zf-C3HC4_2 | 13 | 59 | 2.1e-07 | 30.8 | 1.4e-10 | 2.1e-07 | 30.8 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 1 | zf-C3HC4_4 | 13 | 59 | 6.9e-06 | 25.8 | 4.7e-09 | 6.9e-06 | 25.8 |
| pfu_aug2.0_149.1_30293.t1 | 3 | 1 | zf-RING_UBOX | 13 | 57 | 9.7e-06 | 25.2 | 6.6e-09 | 9.7e-06 | 25.2 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 2 | zf-B_box | 55 | 60 | 4.9e-08 | 32.7 | 2.9 | 4300.0 | -2.3 |
| pfu_aug2.0_149.1_30293.t1 | 3 | 2 | zf-RING_UBOX | 56 | 62 | 9.7e-06 | 25.2 | 0.16 | 230.0 | 1.5 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 2 | zf-C3HC4_2 | 93 | 120 | 2.1e-07 | 30.8 | 0.61 | 910.0 | 0.0 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 2 | zf-C3HC4_4 | 97 | 120 | 6.9e-06 | 25.8 | 0.76 | 1100.0 | -0.5 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 2 | zf-C3HC4 | 100 | 120 | 4.6e-08 | 32.5 | 10.0 | 15000.0 | -6.7 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 3 | zf-B_box | 100 | 145 | 4.9e-08 | 32.7 | 3.7e-06 | 0.0054 | 16.5 |
| pfu_aug2.0_149.1_30293.t1 | 3 | 2 | zf-C3HC4_3 | 100 | 130 | 3.7e-07 | 29.7 | 0.076 | 110.0 | 2.5 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 3 | zf-C3HC4_2 | 101 | 130 | 2.1e-07 | 30.8 | 1.8 | 2600.0 | -1.5 |
| pfu_aug2.0_149.1_30293.t1 | 2 | 2 | zf-RING_5 | 101 | 130 | 4.0e-07 | 29.6 | 10.0 | 15000.0 | -10.2 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 2 | zf-RING_2 | 125 | 130 | 5.3e-09 | 35.7 | 1.5 | 2300.0 | -1.5 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 3 | zf-C3HC4 | 125 | 131 | 4.6e-08 | 32.5 | 1.7 | 2500.0 | -1.8 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 3 | zf-C3HC4_4 | 125 | 131 | 6.9e-06 | 25.8 | 1.6 | 2300.0 | -1.5 |
| pfu_aug2.0_149.1_30293.t1 | 3 | 3 | zf-RING_UBOX | 125 | 133 | 9.7e-06 | 25.2 | 2.8 | 4100.0 | -2.4 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 4 | zf-B_box | 162 | 196 | 4.9e-08 | 32.7 | 1.0e-08 | 1.5e-05 | 24.7 |
| pfu_aug2.0_149.1_30293.t1 | 3 | 3 | zf-C3HC4_3 | 163 | 190 | 3.7e-07 | 29.7 | 10.0 | 15000.0 | -6.2 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 4 | zf-C3HC4_4 | 169 | 189 | 6.9e-06 | 25.8 | 10.0 | 15000.0 | -4.4 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 4 | zf-C3HC4_2 | 170 | 189 | 2.1e-07 | 30.8 | 10.0 | 15000.0 | -6.3 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 3 | zf-RING_2 | 178 | 194 | 5.3e-09 | 35.7 | 0.82 | 1200.0 | -0.7 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 4 | zf-C3HC4 | 182 | 186 | 4.6e-08 | 32.5 | 10.0 | 15000.0 | -6.3 |
| pfu_aug2.0_149.1_30293.t1 | 4 | 4 | zf-RING_2 | 262 | 267 | 5.3e-09 | 35.7 | 10.0 | 15000.0 | -4.3 |
Transcript
| Transcript ID | pfu_aug2.0_149.1_30293.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_149.1_30293.t1 atggcggacagtaaatttctggacgatctcactcagtgtcccatttgttttaatcagtatcaacgaccgaggtgcttacc atgtttacatacattttgtgaaaagtgcgtagacgaatatatcgcttcaatcgaacatggaaagggaaaggacagagggt tcagttgcccagtgtgccgccattttataaacgccccctcagcagaactaggtgaatcaaaatgggctcaaaaatttcca ttgaactatcttgtgctcactttaatcgatcagaaatcgcttcaggaaggtaaactctattgcaatccatgtaagaaaaa gtctaaaagcgagaaatcggtagcgtggtgcattcaatgcaaaatttctctctgcacgatctgcgcagactttcacactt ccgttcctattcttgaaaatcatgaaatagttcccttcggagaaaataaagatgagactcgactggtgtcatcagcacat atcatgtgtggaatacaccaagacaagcccattgaaatgtattgtctggaccatgacatcccttgctgttcaacatgcac catggtaacgcatagaagatgtgaacatgttgatactcttgaaaatgttgccgaaaattcgaaaacttcaaatgtaagag tggaactcgaagatggatttgcaaagcaactggaaacggttgaagaaaatctacgcaatgacgccaaaaatgtagacatc attagggaaagttgccaaaaagcaaagagtaaagtaaatcaggagagcgaagacgccgtaaaacatatgaaatgtctgac tgataatgcgatttccgaagtgcgtcatttgcaagagaaaaaggaggatacgttgactggagccttagaaatgaacaaag gaagaaaagctaccattgaaaattgtcaaaaacttctgaggatttcaatagaacaatcttctgatatccaattcttcctc gaatcaaagaagttgagaaggaagttggatgaattgaccaaagaattgtccgaacttcaatcgattcagatgtcagatgt catattttcgtatgaaattcgaaaagaaattagtgaaatggtaaggtatgactcacttggtcagataacatatgagaacg tcgacaaaccagattcaaatcaaaacgtaccattcaatggaacgtctcaatcatctgatgtgcctgttgaatgtctcaga cgacaagaaaaaagttcccgacattcaccctggataatttcaagcaaattgaaatcgaggcacatagacaaaactcatcc gttactggctgcactttcttggaagatgggcgtcttgttattgctgattacaaaatccgtaaagccagggaaggcattat caaaatttatgacaaggactttgattcatctcaaattgttccgcttaaaggaaagccctgggccgttgcgactttga |
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Protein
| Protein ID | pfu_aug2.0_149.1_30293.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_149.1_30293.t1 MADSKFLDDLTQCPICFNQYQRPRCLPCLHTFCEKCVDEYIASIEHGKGKDRGFSCPVCRHFINAPSAELGESKWAQKFP LNYLVLTLIDQKSLQEGKLYCNPCKKKSKSEKSVAWCIQCKISLCTICADFHTSVPILENHEIVPFGENKDETRLVSSAH IMCGIHQDKPIEMYCLDHDIPCCSTCTMVTHRRCEHVDTLENVAENSKTSNVRVELEDGFAKQLETVEENLRNDAKNVDI IRESCQKAKSKVNQESEDAVKHMKCLTDNAISEVRHLQEKKEDTLTGALEMNKGRKATIENCQKLLRISIEQSSDIQFFL ESKKLRRKLDELTKELSELQSIQMSDVIFSYEIRKEISEMVRYDSLGQITYENVDKPDSNQNVPFNGTSQSSDVPVECLR RQEKSSRHSPWIISSKLKSRHIDKTHPLLAALSWKMGVLLLLITKSVKPGKALSKFMTRTLIHLKLFRLKESPGPLRL |
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