Gene
| Gene Model ID | pfu_aug2.0_149.1_30295 |
|---|---|
| Locus | scaffold149.1 : 339637 ... 371131 : + |
| To GenomeBrowser | scaffold149.1:339637..371131 |
| Genes list of scaffold | scaffold149.1 |
| Synonym | pfu_aug1.0_4268.1_23536 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_149.1_30295.t1 | 6 | 1 | LRR_8 | 52 | 90 | 1.8e-14 | 53.1 | 0.00075 | 1.8 | 8.3 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 1 | LRR_4 | 56 | 82 | 1.0e-29 | 101.6 | 8.4e-05 | 0.21 | 11.2 |
| pfu_aug2.0_149.1_30295.t1 | 3 | 1 | LRR_9 | 56 | 136 | 2.3e-11 | 43.5 | 2.6e-05 | 0.063 | 12.8 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 2 | LRR_4 | 64 | 105 | 1.0e-29 | 101.6 | 1.4e-10 | 3.6e-07 | 29.6 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 1 | LRR_1 | 64 | 83 | 3.3e-13 | 47.6 | 0.0023 | 5.7 | 7.3 |
| pfu_aug2.0_149.1_30295.t1 | 6 | 2 | LRR_8 | 87 | 144 | 1.8e-14 | 53.1 | 4.5e-09 | 1.1e-05 | 25.0 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 2 | LRR_1 | 87 | 106 | 3.3e-13 | 47.6 | 0.0017 | 4.3 | 7.7 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 3 | LRR_4 | 88 | 129 | 1.0e-29 | 101.6 | 2.8e-10 | 7.0e-07 | 28.7 |
| pfu_aug2.0_149.1_30295.t1 | 3 | 2 | LRR_9 | 107 | 254 | 2.3e-11 | 43.5 | 2.7e-12 | 6.8e-09 | 35.5 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 4 | LRR_4 | 111 | 151 | 1.0e-29 | 101.6 | 3.6e-10 | 9.0e-07 | 28.3 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 3 | LRR_1 | 111 | 130 | 3.3e-13 | 47.6 | 0.0023 | 5.7 | 7.3 |
| pfu_aug2.0_149.1_30295.t1 | 6 | 3 | LRR_8 | 134 | 189 | 1.8e-14 | 53.1 | 1.1e-09 | 2.8e-06 | 26.9 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 4 | LRR_1 | 134 | 152 | 3.3e-13 | 47.6 | 0.003 | 7.5 | 7.0 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 5 | LRR_4 | 135 | 170 | 1.0e-29 | 101.6 | 2.5e-11 | 6.1e-08 | 32.1 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 6 | LRR_4 | 154 | 196 | 1.0e-29 | 101.6 | 3.8e-10 | 9.3e-07 | 28.3 |
| pfu_aug2.0_149.1_30295.t1 | 6 | 4 | LRR_8 | 155 | 211 | 1.8e-14 | 53.1 | 1.8e-07 | 0.00043 | 19.9 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 5 | LRR_1 | 155 | 172 | 3.3e-13 | 47.6 | 0.015 | 38.0 | 4.8 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 7 | LRR_4 | 179 | 209 | 1.0e-29 | 101.6 | 3.3e-05 | 0.083 | 12.5 |
| pfu_aug2.0_149.1_30295.t1 | 6 | 5 | LRR_8 | 179 | 212 | 1.8e-14 | 53.1 | 0.0003 | 0.74 | 9.6 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 6 | LRR_1 | 179 | 198 | 3.3e-13 | 47.6 | 0.00058 | 1.4 | 9.2 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 8 | LRR_4 | 230 | 240 | 1.0e-29 | 101.6 | 0.59 | 1500.0 | -1.1 |
| pfu_aug2.0_149.1_30295.t1 | 3 | 3 | LRR_9 | 792 | 832 | 2.3e-11 | 43.5 | 0.0097 | 24.0 | 4.4 |
| pfu_aug2.0_149.1_30295.t1 | 6 | 6 | LRR_8 | 794 | 848 | 1.8e-14 | 53.1 | 2.1e-06 | 0.0052 | 16.5 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 9 | LRR_4 | 795 | 834 | 1.0e-29 | 101.6 | 1.6e-09 | 3.9e-06 | 26.3 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 7 | LRR_1 | 795 | 810 | 3.3e-13 | 47.6 | 0.019 | 46.0 | 4.6 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 8 | LRR_1 | 817 | 835 | 3.3e-13 | 47.6 | 0.0091 | 22.0 | 5.5 |
| pfu_aug2.0_149.1_30295.t1 | 9 | 9 | LRR_1 | 838 | 853 | 3.3e-13 | 47.6 | 0.062 | 150.0 | 3.0 |
| pfu_aug2.0_149.1_30295.t1 | 10 | 10 | LRR_4 | 839 | 855 | 1.0e-29 | 101.6 | 0.014 | 34.0 | 4.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_149.1_30295.t1 | gi|390333510|ref|XP_784143.3| | 0.0 | |
| pfu_aug2.0_149.1_30295.t1 | gi|585648211|ref|XP_006814178.1| | PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 9-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_149.1_30295.t1 | gi|742133976|ref|XP_010877135.1| | PREDICTED: leucine-rich repeat-containing protein 9-like [Esox lucius] | 0.0 |
| pfu_aug2.0_149.1_30295.t1 | gi|591381715|ref|XP_007065393.1| | PREDICTED: leucine-rich repeat-containing protein 9-like [Chelonia mydas] | 0.0 |
| pfu_aug2.0_149.1_30295.t1 | gi|641761905|ref|XP_008166480.1| | PREDICTED: leucine-rich repeat-containing protein 9-like isoform X5 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_149.1_30295.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_149.1_30295.t1 atgtcggcatctagtggctctgtgtcgtctgttagtctgtccagtagtagtggcccctcgggagctccctccacagaaca agtacagctcaccacgagccagccagaggttgtcaagcccaagtcacaaaaggaagaagatgaggaggctttgagagaat tgaaaatagaaaacctggattcctgtagtaagattcagcgactttatctctatggaaacgagatacagaagattgagaat ttatcacacatggtacacatggaggaactgtggctgaacaataaccagatagaaaatatagagaaaatagaaaacctgga ttcctgtagtaagattcagcgactttatctctatggaaacgagatacaaaagattgagaatttatcacacatggtacaca tggaggaactgtggctgaacaataaccagatagaaaatatagagaatttatcaactttgacaaagattcaaaccttaaac ttggcagaaaaccgaattgaaaagatagatcatacactggacgcaaacattgagctagtcgagttgaatttgtcaggaaa tgatattaaatcactcagggacttgacacatttgatgaggttacccaagttgataagcctgagtttgaaggactcggtat actctccggcccccgtcagtctgctgtgtaattactccacacacgtgctgtaccacctacctaatctcacacgactagac acctatgacatcagtaaaaccgtcagtgacctagcagaggcaacagtgaccaagaagaaaatgtactataacatgagagt gaaaacagttaggaggaatatggcagagatactaaccaaaatggcgacgtacaaaaaccgactcctagaatacccgagtg aaagaatgaaagtattgatgaactgtatcaaggaggtacggaaacactttgaggaattgatgacggaaaacatggacttt agtctattagccgatatggatgacaatttgttgattgtcgatgcagtagaagacaagagcagactacaacagttagatga ggacggcaggtttacattaaagatggcggctttaaaggaaagaatgaagaaatgggagagtaaatttacagaggttgata gctatcatcaggaagctataaacagagtgaactttacgggagaaactttagtacggcggatgactatagagctggaatct ggaggaaatgtgagattcgaggaggggtccccttcggacagcagactacagcagctggatgaggatggcaggtttacatt aaagatggcggctttaaaggaaagaatgaagaaatgggagagcaaatttacagaggtcgatagctatcatcaagaagcta tgaatagagtgaacttcacaggagaaactttagtacggcggatgactatagagctggaatctggaggaaatgtgagattc gaagagggatccccatctgacgtatggttctcctcatgccatgatcttgtcctgtcacggttttgtgcatccgattacaa ggagcacgggattgcaggggtaaaaattcacaggatcatacgggttcacaacagaatgttacgcaatagatttgacgaga agttaacgtccatcgtcgatgatgtagacggagagtattatcctagtctaaggaaccactcatacaagaaacttctggag tatttattctggatgtgggatcctaacttaccgggaggcgaacatgaagcttgtcgggtgctagaagatggcttcatgga cgcagaatcgtacaagggtttaggtaaggaaggtgctgtacccctcagtaacagtctgagcttggcagacagacacagga ttcaacatctaaacagacaaattagaagtaaagagacaggggatacgtgtccattcagatatggacagttgattatatcc aaagtcttcctaggaaaaagtgtcaaagctgtggatgaaaggccggtgtctggctcagcatatcccaaaatagacgctgt gttcaaaccaagaaaaatggtcgttccaccaagtgctatacaaagaattatattcaaagatggggacggcctacacagtt gtgagtgcagtacgcggcagtgtgagtggtatatctttgataatgagttggttctaccggaatacatagtggagtttgaa tatgttactaagttcaggtcgaaatctccctttgcacccttcaatgatgtattgttagataatagggaatgtaaaatacc agcggtacctcatgtagaggacgacaaggcggccgataatgatgtcatagatatggagccgatggttaaaccaagacctc gaataacagtactgaatgaagatttgattttgagagctgctggagctgaagcttttgaacatattacagtgctaaatctt catgataatggactgacgaaggtcaaacccctacatgctcttaaagagctcaaaaggcttacactgagctttaatgagct taccaggcttgatgaactttcacacatgggtatagagtttcttgatgctagtttcaacaacatagaaactctagaaggcc tcaagagccagagaatttacgcctga |
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Protein
| Protein ID | pfu_aug2.0_149.1_30295.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_149.1_30295.t1 MSASSGSVSSVSLSSSSGPSGAPSTEQVQLTTSQPEVVKPKSQKEEDEEALRELKIENLDSCSKIQRLYLYGNEIQKIEN LSHMVHMEELWLNNNQIENIEKIENLDSCSKIQRLYLYGNEIQKIENLSHMVHMEELWLNNNQIENIENLSTLTKIQTLN LAENRIEKIDHTLDANIELVELNLSGNDIKSLRDLTHLMRLPKLISLSLKDSVYSPAPVSLLCNYSTHVLYHLPNLTRLD TYDISKTVSDLAEATVTKKKMYYNMRVKTVRRNMAEILTKMATYKNRLLEYPSERMKVLMNCIKEVRKHFEELMTENMDF SLLADMDDNLLIVDAVEDKSRLQQLDEDGRFTLKMAALKERMKKWESKFTEVDSYHQEAINRVNFTGETLVRRMTIELES GGNVRFEEGSPSDSRLQQLDEDGRFTLKMAALKERMKKWESKFTEVDSYHQEAMNRVNFTGETLVRRMTIELESGGNVRF EEGSPSDVWFSSCHDLVLSRFCASDYKEHGIAGVKIHRIIRVHNRMLRNRFDEKLTSIVDDVDGEYYPSLRNHSYKKLLE YLFWMWDPNLPGGEHEACRVLEDGFMDAESYKGLGKEGAVPLSNSLSLADRHRIQHLNRQIRSKETGDTCPFRYGQLIIS KVFLGKSVKAVDERPVSGSAYPKIDAVFKPRKMVVPPSAIQRIIFKDGDGLHSCECSTRQCEWYIFDNELVLPEYIVEFE YVTKFRSKSPFAPFNDVLLDNRECKIPAVPHVEDDKAADNDVIDMEPMVKPRPRITVLNEDLILRAAGAEAFEHITVLNL HDNGLTKVKPLHALKELKRLTLSFNELTRLDELSHMGIEFLDASFNNIETLEGLKSQRIYA |
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