Gene
| Gene Model ID | pfu_aug2.0_149.1_30297 |
|---|---|
| Locus | scaffold149.1 : 376727 ... 381140 : + |
| To GenomeBrowser | scaffold149.1:376727..381140 |
| Genes list of scaffold | scaffold149.1 |
| Synonym | pfu_aug1.0_15042.1_39662 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_149.1_30297.t1 | 5 | 1 | LRR_4 | 30 | 67 | 1.5e-24 | 85.1 | 4.7e-10 | 9.9e-07 | 28.2 |
| pfu_aug2.0_149.1_30297.t1 | 3 | 1 | LRR_8 | 30 | 87 | 3.0e-20 | 71.7 | 2.2e-11 | 4.7e-08 | 32.6 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 1 | LRR_6 | 30 | 46 | 8.4e-06 | 25.3 | 9.2e-05 | 0.19 | 11.8 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 1 | LRR_1 | 31 | 49 | 1.4e-07 | 30.5 | 0.0012 | 2.6 | 8.4 |
| pfu_aug2.0_149.1_30297.t1 | 2 | 1 | LRR_9 | 53 | 126 | 8.9e-12 | 44.9 | 5.6e-07 | 0.0012 | 18.4 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 2 | LRR_6 | 53 | 66 | 8.4e-06 | 25.3 | 0.083 | 180.0 | 2.7 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 2 | LRR_4 | 54 | 93 | 1.5e-24 | 85.1 | 9.2e-08 | 0.00019 | 20.9 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 3 | LRR_6 | 77 | 89 | 8.4e-06 | 25.3 | 0.36 | 760.0 | 0.7 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 3 | LRR_4 | 78 | 119 | 1.5e-24 | 85.1 | 2.3e-09 | 4.9e-06 | 26.0 |
| pfu_aug2.0_149.1_30297.t1 | 3 | 2 | LRR_8 | 78 | 134 | 3.0e-20 | 71.7 | 3.0e-12 | 6.4e-09 | 35.4 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 2 | LRR_1 | 78 | 96 | 1.4e-07 | 30.5 | 0.012 | 25.0 | 5.4 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 4 | LRR_4 | 101 | 142 | 1.5e-24 | 85.1 | 3.0e-12 | 6.4e-09 | 35.2 |
| pfu_aug2.0_149.1_30297.t1 | 3 | 3 | LRR_8 | 101 | 157 | 3.0e-20 | 71.7 | 5.6e-10 | 1.2e-06 | 28.1 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 3 | LRR_1 | 101 | 117 | 1.4e-07 | 30.5 | 0.0015 | 3.3 | 8.1 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 4 | LRR_6 | 101 | 114 | 8.4e-06 | 25.3 | 0.0052 | 11.0 | 6.4 |
| pfu_aug2.0_149.1_30297.t1 | 2 | 2 | LRR_9 | 120 | 197 | 8.9e-12 | 44.9 | 2.7e-10 | 5.8e-07 | 29.2 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 5 | LRR_4 | 123 | 157 | 1.5e-24 | 85.1 | 2.1e-07 | 0.00044 | 19.8 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 4 | LRR_1 | 123 | 143 | 1.4e-07 | 30.5 | 2.0e-05 | 0.043 | 13.8 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 5 | LRR_6 | 123 | 135 | 8.4e-06 | 25.3 | 0.013 | 27.0 | 5.2 |
| pfu_aug2.0_149.1_30297.t1 | 5 | 5 | LRR_1 | 148 | 157 | 1.4e-07 | 30.5 | 2.0 | 4300.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_149.1_30297.t1 | gi|524883443|ref|XP_005098352.1| | PREDICTED: leucine-rich repeat-containing protein 9-like isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_149.1_30297.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_149.1_30297.t1 atgtcaaacaaaccgatacgaatgaaccagggtaattctcgcagcttagatttactgaatggagatatgtcactgacgcc catcatggagaatctagaagttctgcatttagggtacaatggtatcaaagatatggctgtgttacaactcagtaggctga cctcattaaaggctttgttcctgcaaggaaacgagattatggtcatcaacggtctagaaggtctacatgatttacgggaa ctggtgctagacagaaataaggtcaagaacgtgtctgagacgtcgtttaacaatcaatggaatctacaagagctccacct ggaggagaacaggatacgtgacctctcaaatctcaactgtatggataacctccagaggttgtacctcggatcaaatagaa ttcaggaaatatctgagcttgagaagttagatggactcggaaaccttatagaaatatccctagtcaataatgctgctgct cgtcgacatttacatcgtcctatcctggtgtttaagttaaagcagatactcgttatagacggtataccggtcagtgaaga ggagagggcaaaggccgaactatacttcatggaccaaacggtatcatgcagacattaa |
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Protein
| Protein ID | pfu_aug2.0_149.1_30297.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_149.1_30297.t1 MSNKPIRMNQGNSRSLDLLNGDMSLTPIMENLEVLHLGYNGIKDMAVLQLSRLTSLKALFLQGNEIMVINGLEGLHDLRE LVLDRNKVKNVSETSFNNQWNLQELHLEENRIRDLSNLNCMDNLQRLYLGSNRIQEISELEKLDGLGNLIEISLVNNAAA RRHLHRPILVFKLKQILVIDGIPVSEEERAKAELYFMDQTVSCRH |
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