Gene
| Gene Model ID | pfu_aug2.0_1490.1_01665 |
|---|---|
| Locus | scaffold1490.1 : 65356 ... 70913 : + |
| To GenomeBrowser | scaffold1490.1:65356..70913 |
| Genes list of scaffold | scaffold1490.1 |
| Synonym | pfu_aug1.0_16572.1_54322 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 34-like | GO:0008152 GO:0009987 GO:0016787 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1490.1_01665.t1 | 2 | 1 | ResIII | 13 | 144 | 1.3e-08 | 34.8 | 9.2e-11 | 1.9e-07 | 31.0 |
| pfu_aug2.0_1490.1_01665.t1 | 2 | 1 | DEAD | 17 | 179 | 2.5e-16 | 59.6 | 6.1e-19 | 1.3e-15 | 57.3 |
| pfu_aug2.0_1490.1_01665.t1 | 3 | 1 | Helicase_C | 168 | 189 | 2.5e-12 | 46.4 | 4.8 | 10000.0 | -3.6 |
| pfu_aug2.0_1490.1_01665.t1 | 2 | 2 | ResIII | 222 | 271 | 1.3e-08 | 34.8 | 0.15 | 310.0 | 1.0 |
| pfu_aug2.0_1490.1_01665.t1 | 3 | 2 | Helicase_C | 232 | 249 | 2.5e-12 | 46.4 | 3.2 | 6800.0 | -3.0 |
| pfu_aug2.0_1490.1_01665.t1 | 3 | 3 | Helicase_C | 270 | 339 | 2.5e-12 | 46.4 | 4.9e-15 | 1.0e-11 | 44.4 |
| pfu_aug2.0_1490.1_01665.t1 | 2 | 2 | DEAD | 272 | 302 | 2.5e-16 | 59.6 | 0.29 | 610.0 | -0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1490.1_01665.t1 | gi|291244691|ref|XP_002742228.1| | PREDICTED: Werner syndrome ATP-dependent helicase-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1490.1_01665.t1 | gi|585699264|ref|XP_002739720.2| | PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1490.1_01665.t1 | gi|260782460|ref|XP_002586305.1| | hypothetical protein BRAFLDRAFT_82911 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1490.1_01665.t1 | gi|260796163|ref|XP_002593074.1| | hypothetical protein BRAFLDRAFT_72852 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1490.1_01665.t1 | gi|585715793|ref|XP_006825403.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1490.1_01665.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1490.1_01665.t1 atgtcgatcgctgaaacagtatctgaaaagttcaacgttcagttgcgtgaatatcaactgaaagccatacaggccgttct ggatagaaaggatgtatttgtgtgcacacgaactgggagtggaaagtcgcttatttacgaggctatacccatattgacca aaggactagttgtcattgtcgcacctctactgtctattatgaaagaacaagtagaaaaattgaatagtaatggactaagg gcaacttatataggaaaggatatcggagaaaacgaagaaataattaatggacagtttagttatttgtttggaagcccgga gagctttgtcggcgacagtaaatggagggaagtgctaaaatcagaaccgtacagaaataatctgaagctgatagttgtag atgaagcacatacagttactctgtggggagaaggcagagagtcggaggatccatttagagagtgtttctcgaaaatctcc gagatgcgttccttgtgtccaaatataccattcgttgccctgacagcaactgctgggccaactcaaagacggaaaataat taagtctctttgttttcgacctgggtatgaactcttcattgattccccagatagaaaaaatatcaaaatttcagtgaaaa ccgtcagcaatagtgacagttttgaaacgatattcgagtggcttattcaggacttgaaccaattcaaggagcagactgcc agacatgtaattttttgtgagagcataagtgatgtgacaaaagtgtacttgacatttgtaaaaaactgcaaacagagtag agaaaattttcagatgttccacagtaaaacttcagaggatgtgaaagaccttattcgaaaagacatgtctgtggatggta aaataagaatccttgtgtgtacaaatgctgcaggaatgggtgtaaactactaccaagttcacaatgttgttcactatggt ttaccgagagaaattgatacttttgtccaacaaatgggtagaggagggagagatggagctccttccaatgaacttgtatt attcaaagtacatagaggacgtctgaagcacatggaacccgaacttattagatttgctaaggagaatagtgtttgtagga ggaaattgttatgcttagcatttcaaacaaactgcgaggaattaactcctttgcatatttgttgtgacgtatgcgaaaaa atgtttgatgaattattcacttttagttcctatgtattctag |
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Protein
| Protein ID | pfu_aug2.0_1490.1_01665.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1490.1_01665.t1 MSIAETVSEKFNVQLREYQLKAIQAVLDRKDVFVCTRTGSGKSLIYEAIPILTKGLVVIVAPLLSIMKEQVEKLNSNGLR ATYIGKDIGENEEIINGQFSYLFGSPESFVGDSKWREVLKSEPYRNNLKLIVVDEAHTVTLWGEGRESEDPFRECFSKIS EMRSLCPNIPFVALTATAGPTQRRKIIKSLCFRPGYELFIDSPDRKNIKISVKTVSNSDSFETIFEWLIQDLNQFKEQTA RHVIFCESISDVTKVYLTFVKNCKQSRENFQMFHSKTSEDVKDLIRKDMSVDGKIRILVCTNAAGMGVNYYQVHNVVHYG LPREIDTFVQQMGRGGRDGAPSNELVLFKVHRGRLKHMEPELIRFAKENSVCRRKLLCLAFQTNCEELTPLHICCDVCEK MFDELFTFSSYVF |
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