Gene
| Gene Model ID | pfu_aug2.0_1491.1_05079 |
|---|---|
| Locus | scaffold1491.1 : 1 ... 10915 : - |
| To GenomeBrowser | scaffold1491.1:1..10915 |
| Genes list of scaffold | scaffold1491.1 |
| Synonym | pfu_aug1.0_25632.1_04451 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna polymerase i-specific transcription initiation factor rrn3 isoform x2 | GO:0006351 GO:0044699 GO:0065007 GO:0071840 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1491.1_05079.t1 | 1 | 1 | RRN3 | 43 | 355 | 0.0 | 231.0 | 0.0 | 0.0 | 230.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1491.1_05079.t1 | gi|558200031|ref|XP_006105278.1| | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X2 [Myotis lucifugus] | 0.0 |
| pfu_aug2.0_1491.1_05079.t1 | gi|291241045|ref|XP_002740429.1| | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1491.1_05079.t1 | gi|676437082|ref|XP_009048088.1| | hypothetical protein LOTGIDRAFT_212940 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1491.1_05079.t1 | gi|683917379|ref|XP_009090167.1| | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X2 [Serinus canaria] | 0.0 |
| pfu_aug2.0_1491.1_05079.t1 | gi|683917375|ref|XP_009090165.1| | PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Serinus canaria] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1491.1_05079.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05079.t1 atgagtgtccctgaaaagaagagaagagctcccctggacctttcacttctgttggatcagtataaacagggttatacaaa ggagtatgacaaatttctgagcagactaggggatcccgagattcagaagttagactgggtgacacagaagccagatgtag tacaggattaccagtctttattactaagtctactgtcggcacatacatgttacctaagggcaggcttacgtatgctggtc aaacatttcctgccaaagttggctccctcaaatcctaaggatgacaatggtaactttaccatcacaaaggaaacaagaca gagagatgaggtagcctttgtcaatgtacacatgcttctgaaggcattgttccagtgtacaccaatgtgtcctgttgtac tgatgccgttgttgacagacctctacccacacatgacaaaggatgtatactaccacgagtgctacgtcagaaatctacta cagaccacatattacataccctcactacgtcagaaaatatgccgcctcgtagtagacggaatgctgacttttgatgtgag atgtcctcgacatgagatagaggaagcagaggataatgacgaggaggaggaggacatggaacaggaggtattgtttgaga tggatgatccagagattcaaaaagaaattacatcaacagaaaattcctggaataagaagaacttagaagacagatgtggt aaacccatgtctcacagggaagcgcataaattagacgtcgtcatggatctcactttacaatacatacataatgtctgcca tgctcaagggaaactgaactgggaggccaccaagcagctttaccgagagttattattaatatttgagcaggtcatcttgc caacccacgcctcatgtcacgttcagtttatcatgttttatctatgtagcctcaaacaggcgatatgtgaaggctttttg gatttcttatggaagcgaatccaggatcctaatgtacagggggtgttcagacaggcagcagctggttatatgggcagtat actatccagggccttatttgtccccatcag |
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Protein
| Protein ID | pfu_aug2.0_1491.1_05079.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05079.t1 MSVPEKKRRAPLDLSLLLDQYKQGYTKEYDKFLSRLGDPEIQKLDWVTQKPDVVQDYQSLLLSLLSAHTCYLRAGLRMLV KHFLPKLAPSNPKDDNGNFTITKETRQRDEVAFVNVHMLLKALFQCTPMCPVVLMPLLTDLYPHMTKDVYYHECYVRNLL QTTYYIPSLRQKICRLVVDGMLTFDVRCPRHEIEEAEDNDEEEEDMEQEVLFEMDDPEIQKEITSTENSWNKKNLEDRCG KPMSHREAHKLDVVMDLTLQYIHNVCHAQGKLNWEATKQLYRELLLIFEQVILPTHASCHVQFIMFYLCSLKQAICEGFL DFLWKRIQDPNVQGVFRQAAAGYMGSILSRALFVPI |
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