Gene
| Gene Model ID | pfu_aug2.0_1491.1_05085 |
|---|---|
| Locus | scaffold1491.1 : 83548 ... 88175 : - |
| To GenomeBrowser | scaffold1491.1:83548..88175 |
| Genes list of scaffold | scaffold1491.1 |
| Synonym | pfu_aug1.0_14000.1_18071 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1491.1_05085.t1 | 1 | 1 | Collagen | 117 | 152 | 4.9e-07 | 29.1 | 1.0e-10 | 7.8e-07 | 28.5 |
| pfu_aug2.0_1491.1_05085.t1 | 2 | 1 | C1q | 162 | 250 | 3.4e-20 | 72.3 | 1.7e-19 | 1.3e-15 | 57.5 |
| pfu_aug2.0_1491.1_05085.t1 | 2 | 2 | C1q | 265 | 309 | 3.4e-20 | 72.3 | 1.1e-05 | 0.084 | 12.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1491.1_05085.t1 | gi|617610090|ref|XP_007524818.1| | PREDICTED: complement C1q-like protein 2 isoform X2 [Erinaceus europaeus] | 4.0e-12 |
| pfu_aug2.0_1491.1_05085.t1 | gi|507625421|ref|XP_004626418.1| | PREDICTED: complement C1q-like protein 2 isoform X3 [Octodon degus] | 5.0e-12 |
| pfu_aug2.0_1491.1_05085.t1 | gi|545532022|ref|XP_005631973.1| | PREDICTED: complement component 1, q subcomponent-like 2 isoform X1 [Canis lupus familiaris] | 6.0e-12 |
| pfu_aug2.0_1491.1_05085.t1 | gi|555980314|ref|XP_005902084.1| | PREDICTED: complement C1q-like protein 2 isoform X1 [Bos mutus] | 9.0e-12 |
| pfu_aug2.0_1491.1_05085.t1 | gi|507927022|ref|XP_004674770.1| | 1.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_1491.1_05085.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05085.t1 atgaaaatattacagtgtgctgtattaatcagtgtcctcatatcctccgctgcatactacgtgaccacacccacatttag gaccctcaacccctgggtacgcaatactcccgcaaaaactcccggtaaacttcaaaacgcaacaagagcacagacaaccg ttccctttacaagtacatctacatcgtctatcgtcacaacccgggagagagatcctcagaacgataccaaagtacaatgc ccgactctacccgaaactcatcaaacaccggtcaatatatacctcaacggaatgcatgttaaaactaaacaggatggtga atccgtggcttttacagagacagggtgtgagtgtccggccggtccccagggtcctaaaggggaaaaaggaatggctggta tgccaggggagcccggactacagggacctgctggcccgccaggtatgcctggtccatcagcaaagactgatagtcagttt gtggcattctctgttgtattagagtccagaccatttggaccctatgaaatatacaaaattgttgagtttgacaatgttct aatgaatgaaggtaaagcatatgacgagaacagaggagtatttaccgcccctgtcagtggcttctttcagttccatgttc acatacacacggtggtagaacaccaggcagaagtcagactcattctgaacagtaagcagatagtatctgtctgggctgat ggtcagatcaacaagtccactgcctcacagagacccatgtctccgtttgggtccaagtctaatgcccagaaagagccgat gcatgagatgggctcctcaaatagtgctataatacacatggacaagggagaaaaggtctactgtttactgccaaaagccc atgtactggccgggctcgggtttacttctttctcgggatacttaatgaaggcagattcataa |
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Protein
| Protein ID | pfu_aug2.0_1491.1_05085.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05085.t1 MKILQCAVLISVLISSAAYYVTTPTFRTLNPWVRNTPAKTPGKLQNATRAQTTVPFTSTSTSSIVTTRERDPQNDTKVQC PTLPETHQTPVNIYLNGMHVKTKQDGESVAFTETGCECPAGPQGPKGEKGMAGMPGEPGLQGPAGPPGMPGPSAKTDSQF VAFSVVLESRPFGPYEIYKIVEFDNVLMNEGKAYDENRGVFTAPVSGFFQFHVHIHTVVEHQAEVRLILNSKQIVSVWAD GQINKSTASQRPMSPFGSKSNAQKEPMHEMGSSNSAIIHMDKGEKVYCLLPKAHVLAGLGFTSFSGYLMKADS |
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