Gene
| Gene Model ID | pfu_aug2.0_1491.1_05086 |
|---|---|
| Locus | scaffold1491.1 : 108154 ... 118185 : - |
| To GenomeBrowser | scaffold1491.1:108154..118185 |
| Genes list of scaffold | scaffold1491.1 |
| Synonym | pfu_aug1.0_2418.1_58902 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-4- partial | GO:0005783 GO:0007165 GO:0009897 GO:0016021 GO:0016594 GO:0016934 GO:0042391 GO:0045202 GO:0050905 GO:0051239 GO:0051260 GO:0051291 GO:0060012 GO:1902476 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1491.1_05086.t1 | 1 | 1 | Neur_chan_LBD | 36 | 241 | 1.4013e-45 | 154.5 | 0.0 | 2.8026e-45 | 154.1 |
| pfu_aug2.0_1491.1_05086.t1 | 2 | 1 | Neur_chan_memb | 249 | 344 | 3.1e-39 | 135.2 | 2.7e-37 | 1.3e-33 | 116.8 |
| pfu_aug2.0_1491.1_05086.t1 | 2 | 2 | Neur_chan_memb | 363 | 393 | 3.1e-39 | 135.2 | 1.9e-08 | 9.4e-05 | 22.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1491.1_05086.t1 | gi|524911274|ref|XP_005110503.1| | PREDICTED: glycine receptor subunit alpha-4-like, partial [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1491.1_05086.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05086.t1 atgaattccgtaaaggtgatcaaattgtggagtaagataattggtctgggactgttgctgttgaccgccacagggaatgc taggtctgcctacagcaaatttcgccaaaagataatagatcagctgttagcggactatgatggcaaaagtcctccaactt acgagaatgataaggttgtgaccagtcatgtacaagtctatattctaagtatagattccataagtagtgcaaccatggac ttttcgatgagtttttttctccgtcagcgatggattgatccacgtttgcaatacgaagaagagaataacataactcgtat agagctggacacccgggttatatcacagatttgggttccagatctctacatagtcaacgagaaaaatgctgaggtacatg atgtgactgtacctaataaactgatgcacctgtaccccagtggaatggttgtgtatagcatgagagtgtcagggacgttt tcttgctacatggacttaatgaagtatcccttggactcacaaatatgtaacattacaatggagagctatggtctgagtac caacactatggtgttacgttggaacaccccagctgtaactgtctctcccagtctagagttaccacagtttaacttgtcag aattccatcattttgtctgcgatgcccaatatgctgcggtgaattttacctgcattggattcacattgcattttgaccgt aattacggctactacatgattcaagtgtacattccaagtgtgcttatagtgatgttgtcatgggtttcattttggttaaa catcgatgcgaccccagcaagaatttcattgggtctgctaacggtcctcaccatgacaacccaatcaacaggtgcgcgct cagagcttcccagagtttcctacattaaagccatcgatatctggatggcgacatgcctctttttcgtttttgctgcactc attgaatttgcatatgtgaatgttctatcaagagtggaacaacgaagacttgccactataaaagacatggctcagctaat acataatggtgaggaacccaaaaaatccaggaagttctcattctggtcagcggagagtcgtcagagagcgagaacagttg ataagatttcccgcgttttgtttccttgtattttcatattatttaatgtgatttactggctggtgtatcgcctttggaaa ccagtcaaaggatga |
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Protein
| Protein ID | pfu_aug2.0_1491.1_05086.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05086.t1 MNSVKVIKLWSKIIGLGLLLLTATGNARSAYSKFRQKIIDQLLADYDGKSPPTYENDKVVTSHVQVYILSIDSISSATMD FSMSFFLRQRWIDPRLQYEEENNITRIELDTRVISQIWVPDLYIVNEKNAEVHDVTVPNKLMHLYPSGMVVYSMRVSGTF SCYMDLMKYPLDSQICNITMESYGLSTNTMVLRWNTPAVTVSPSLELPQFNLSEFHHFVCDAQYAAVNFTCIGFTLHFDR NYGYYMIQVYIPSVLIVMLSWVSFWLNIDATPARISLGLLTVLTMTTQSTGARSELPRVSYIKAIDIWMATCLFFVFAAL IEFAYVNVLSRVEQRRLATIKDMAQLIHNGEEPKKSRKFSFWSAESRQRARTVDKISRVLFPCIFILFNVIYWLVYRLWK PVKG |
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