Gene
| Gene Model ID | pfu_aug2.0_1491.1_05087 |
|---|---|
| Locus | scaffold1491.1 : 128046 ... 150592 : + |
| To GenomeBrowser | scaffold1491.1:128046..150592 |
| Genes list of scaffold | scaffold1491.1 |
| Synonym | pfu_aug1.0_2418.1_58903 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1491.1_05087.t1 | 2 | 1 | SRCR | 302 | 392 | 7.00649e-45 | 151.5 | 8.6e-22 | 1.8e-18 | 66.6 |
| pfu_aug2.0_1491.1_05087.t1 | 2 | 1 | SRCR_2 | 313 | 333 | 3.6e-07 | 30.3 | 0.0062 | 13.0 | 6.0 |
| pfu_aug2.0_1491.1_05087.t1 | 6 | 1 | SGL | 401 | 458 | 1.9e-10 | 40.5 | 0.016 | 35.0 | 3.6 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 1 | Ldl_recept_b | 440 | 452 | 1.9e-34 | 117.6 | 1.0 | 2200.0 | -1.0 |
| pfu_aug2.0_1491.1_05087.t1 | 6 | 2 | SGL | 470 | 500 | 1.9e-10 | 40.5 | 0.031 | 66.0 | 2.7 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 2 | Ldl_recept_b | 472 | 497 | 1.9e-34 | 117.6 | 1.8e-05 | 0.039 | 14.2 |
| pfu_aug2.0_1491.1_05087.t1 | 6 | 3 | SGL | 512 | 537 | 1.9e-10 | 40.5 | 0.039 | 82.0 | 2.4 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 3 | Ldl_recept_b | 513 | 533 | 1.9e-34 | 117.6 | 0.016 | 34.0 | 4.8 |
| pfu_aug2.0_1491.1_05087.t1 | 2 | 2 | SRCR | 583 | 679 | 7.00649e-45 | 151.5 | 5.9e-29 | 1.2e-25 | 89.6 |
| pfu_aug2.0_1491.1_05087.t1 | 2 | 2 | SRCR_2 | 589 | 625 | 3.6e-07 | 30.3 | 6.2e-08 | 0.00013 | 22.1 |
| pfu_aug2.0_1491.1_05087.t1 | 6 | 4 | SGL | 697 | 799 | 1.9e-10 | 40.5 | 5.0e-05 | 0.11 | 11.9 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 4 | Ldl_recept_b | 707 | 725 | 1.9e-34 | 117.6 | 4.7 | 9900.0 | -3.1 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 5 | Ldl_recept_b | 731 | 751 | 1.9e-34 | 117.6 | 0.00011 | 0.23 | 11.8 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 6 | Ldl_recept_b | 774 | 814 | 1.9e-34 | 117.6 | 5.6e-11 | 1.2e-07 | 31.9 |
| pfu_aug2.0_1491.1_05087.t1 | 6 | 5 | SGL | 790 | 839 | 1.9e-10 | 40.5 | 0.023 | 49.0 | 3.1 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 7 | Ldl_recept_b | 819 | 857 | 1.9e-34 | 117.6 | 1.4e-11 | 3.0e-08 | 33.8 |
| pfu_aug2.0_1491.1_05087.t1 | 6 | 6 | SGL | 840 | 922 | 1.9e-10 | 40.5 | 6.2e-07 | 0.0013 | 18.1 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 8 | Ldl_recept_b | 862 | 893 | 1.9e-34 | 117.6 | 6.6e-05 | 0.14 | 12.5 |
| pfu_aug2.0_1491.1_05087.t1 | 9 | 9 | Ldl_recept_b | 902 | 942 | 1.9e-34 | 117.6 | 0.00036 | 0.77 | 10.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1491.1_05087.t1 | gi|524868361|ref|XP_005090983.1| | PREDICTED: low-density lipoprotein receptor-related protein 4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1491.1_05087.t1 | gi|658853057|ref|XP_008409134.1| | PREDICTED: low-density lipoprotein receptor-related protein 5 [Poecilia reticulata] | 1.96182e-44 |
| pfu_aug2.0_1491.1_05087.t1 | gi|617504343|ref|XP_007541566.1| | PREDICTED: low-density lipoprotein receptor-related protein 5 [Poecilia formosa] | 1.96182e-44 |
Transcript
| Transcript ID | pfu_aug2.0_1491.1_05087.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05087.t1 atggcgacagaggatcctatagttcgcttcactcccgggttttctttggtcatgatggtgatttctgccctcgcttcgtc ggggaacttatgtgaatgtaacgataatgaaaatcataagtacatgccgtattatctgtcaataacaaattttattcgta aaattcaggcaggattgatgttaaaattcctgatcgacaagatttttgttgtgtttggagtaaaggtcttccagcgaatt gtcggaattccaatggggatcaattgtgccccactcattgccgacatttttctttactcgtacgaagctgaattcattca atctttggtctctgaagggaaaagatacttagcatctgacttcaacttcacttacagatacatagacgatgtgtcgtcca tcaataatccaaaattcgcagattacctcagcagaatctatccttcggagcttgaagtcaaagaaactacagagacaaat aattcagcatcctatttggacataatgttgtcctacgatactgatgatcacatgtacatatcactctatgacaaacgtga cgatttcattttcagcatcacaaactttccttttctgagtagcaacattccttcatcgcctgctatctcagttgatgcgc tatgccagagcaaccttacaaaattgtttcgaatgtcacaatatcggcgatccttcacagtgtaccaggactgtcacgtg caaatcgaacgaggtggacctgggatagtcggacgtaaacgtaatttacgtgaatatagacagaccagtggatgtaacca atgctgtaagagtgacaattgtaacaacagactctgcaatgcaacaacaccgtccactcccttacctaccacgtccccta atcaggtcacctatgtccgtttggtgggcggtaggaatgcatacgagggacgtgtagaagtttttcacaacaatgtttgg ggaaccatatgtgatgacggatggtcagggaaggaagctcatggagtgggtgcaactaaaggtacgttattcggcggagc tccaccattggctaggatatggatggacgaagtgaactgtacaacaggagacgagacaaatatagatcagtgtcagtata acggatggggagtacatgattgtagtcatggtgaagatgcaggtgtcatatgtaatccggcgagtagcgaggataacatc atatttttggtggataatggtattttggtaaggatggacctcaatacacataattttgtaccgatacctataagtgatat ccatagacctgtcgccattgattatgaccccacggagggaaggatttatttcctagattatgcattgaagcagatcgata gcgtccattacagtggaatagatgttcgtgaattgaaacagatggatgataaaaaccgtctttatttcaccgatggaggt atgaacgaaatctcttctgttcagttagacggaggcaatagaaaactgatacactccgactcgaactctcagttctttgc cctgtctatatacaaacagtatctttactacacagactggactacaagtactgtaatgagagtaaacaaagatggcaccg ggaacactgctataggaccacgatcgttcagaaaaatgctggatatacgtgtacataagtacggatacggtttgccaggt ctaactacgtcatcgccgatcgtcgttgaccagggccatatattcgttcgtcttgttggacgtggaggacataacgaagg gacggttcaggtgtacatcaatggggagtggggtgctatatgtgacgattcgtgggacagtaaggatgccggagtagtct gtaacatgctgggttacccaagagctaattcggtcgcagttgccgaaagcaaatacggaacagaccagtcagtgctcata ttccttgatgacgtcaactgtactggtagtgaggaccatatagcaagctgcacccgacctgagaactggggcgtacataa ctgtggtcataacgaagacgccggggtcaggtgtaacttccaggccgatcagttaaaggactttatactgtctgccgact cattaagccacgagctttatagaatggatgttgaaacaggcagctacagtgctataccccaactacagctccgtaaccct atagctgtcgactatgatcccatacagcataaaatgtattatactgacgtaggcctacacgtcatcaagtctaccaatct ggacggaactgccgaaacattcatcaagaatcttactataagttcaataccggatggtatgaatcttgatgtgacaaatc gacttatattttactctgatgccggaagtgacatcattgccaaaatgtcgatggatggatcaaacgaacagactatcgta aactcgaatctagaccagccaagggctatagcattagatgaaacaaacaggatcgtatattggacagattggggttctaa tccaaaaatagaaagggcaaattatgacggaacaagtagatcggtcatagccgactcaaatctgaaattccccaacggcc tagtgtatgatccatcaaccaactctctgtttttctgtgatgccggtactaacatgattgaacaaataaacactgacggc agcggacgtaagacgttgtttacagacatcggggctcacttttttggcgttgacgttgattcacaatatgtgtacttttc agactggaataaggacggtataatgaggattgctaaagatggttccggagaagctccaatcggacctccaacgtttggaa gactgaacggcgtagccttacatcataacggtggccaatcaagatag |
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Protein
| Protein ID | pfu_aug2.0_1491.1_05087.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1491.1_05087.t1 MATEDPIVRFTPGFSLVMMVISALASSGNLCECNDNENHKYMPYYLSITNFIRKIQAGLMLKFLIDKIFVVFGVKVFQRI VGIPMGINCAPLIADIFLYSYEAEFIQSLVSEGKRYLASDFNFTYRYIDDVSSINNPKFADYLSRIYPSELEVKETTETN NSASYLDIMLSYDTDDHMYISLYDKRDDFIFSITNFPFLSSNIPSSPAISVDALCQSNLTKLFRMSQYRRSFTVYQDCHV QIERGGPGIVGRKRNLREYRQTSGCNQCCKSDNCNNRLCNATTPSTPLPTTSPNQVTYVRLVGGRNAYEGRVEVFHNNVW GTICDDGWSGKEAHGVGATKGTLFGGAPPLARIWMDEVNCTTGDETNIDQCQYNGWGVHDCSHGEDAGVICNPASSEDNI IFLVDNGILVRMDLNTHNFVPIPISDIHRPVAIDYDPTEGRIYFLDYALKQIDSVHYSGIDVRELKQMDDKNRLYFTDGG MNEISSVQLDGGNRKLIHSDSNSQFFALSIYKQYLYYTDWTTSTVMRVNKDGTGNTAIGPRSFRKMLDIRVHKYGYGLPG LTTSSPIVVDQGHIFVRLVGRGGHNEGTVQVYINGEWGAICDDSWDSKDAGVVCNMLGYPRANSVAVAESKYGTDQSVLI FLDDVNCTGSEDHIASCTRPENWGVHNCGHNEDAGVRCNFQADQLKDFILSADSLSHELYRMDVETGSYSAIPQLQLRNP IAVDYDPIQHKMYYTDVGLHVIKSTNLDGTAETFIKNLTISSIPDGMNLDVTNRLIFYSDAGSDIIAKMSMDGSNEQTIV NSNLDQPRAIALDETNRIVYWTDWGSNPKIERANYDGTSRSVIADSNLKFPNGLVYDPSTNSLFFCDAGTNMIEQINTDG SGRKTLFTDIGAHFFGVDVDSQYVYFSDWNKDGIMRIAKDGSGEAPIGPPTFGRLNGVALHHNGGQSR |
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