Gene
| Gene Model ID | pfu_aug2.0_1492.1_08403 |
|---|---|
| Locus | scaffold1492.1 : 117398 ... 143095 : - |
| To GenomeBrowser | scaffold1492.1:117398..143095 |
| Genes list of scaffold | scaffold1492.1 |
| Synonym | pfu_aug1.0_7005.1_45553 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1492.1_08403.t1 | 1 | 1 | I-set | 71 | 154 | 2.0e-06 | 27.5 | 2.5e-09 | 5.3e-06 | 26.2 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 1 | SRCR | 177 | 273 | 0.0 | 176.0 | 1.4e-16 | 3.0e-13 | 49.9 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 1 | SRCR_2 | 186 | 212 | 6.0e-09 | 36.0 | 0.0022 | 4.7 | 7.5 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 2 | SRCR | 293 | 385 | 0.0 | 176.0 | 3.3e-10 | 7.0e-07 | 29.5 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 2 | SRCR_2 | 317 | 329 | 6.0e-09 | 36.0 | 1.2 | 2500.0 | -1.3 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 3 | SRCR | 404 | 506 | 0.0 | 176.0 | 1.4e-13 | 2.9e-10 | 40.3 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 3 | SRCR_2 | 410 | 440 | 6.0e-09 | 36.0 | 0.019 | 40.0 | 4.5 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 4 | SRCR | 521 | 619 | 0.0 | 176.0 | 2.5e-15 | 5.3e-12 | 45.9 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 4 | SRCR_2 | 527 | 562 | 6.0e-09 | 36.0 | 9.5e-06 | 0.02 | 15.1 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 5 | SRCR | 636 | 673 | 0.0 | 176.0 | 0.00087 | 1.8 | 8.9 |
| pfu_aug2.0_1492.1_08403.t1 | 5 | 5 | SRCR_2 | 652 | 674 | 6.0e-09 | 36.0 | 0.0054 | 11.0 | 6.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1492.1_08403.t1 | gi|390346361|ref|XP_796583.3| | 2.0e-37 | |
| pfu_aug2.0_1492.1_08403.t1 | gi|556954097|ref|XP_005988784.1| | PREDICTED: deleted in malignant brain tumors 1 protein-like [Latimeria chalumnae] | 7.0e-37 |
| pfu_aug2.0_1492.1_08403.t1 | gi|390345785|ref|XP_001198701.2| | 1.0e-36 | |
| pfu_aug2.0_1492.1_08403.t1 | gi|390369112|ref|XP_003731587.1| | 2.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_1492.1_08403.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1492.1_08403.t1 atgtcttccgaaattaaagtaaccggatgtgacagttctaccgaattgaagcggtggttgttgcatgcaagcaggagatg cttactttcctgggcacctggtctcactcccatatcaggagttcgcttcttttcatatggtggagataatcaatacagat ataatgggttagctgaacttttgtatcctgttgttaatgcatatggaggaacagtgggagaaaggaccatcttaagatgc agagttaagactgatgaagctccagaaataaattggtacaaaaaggcattggaaaataccccatgttccatgagacatac acagcttcggacagctgagggattgttttgcttggaagataggtcaaggtcacatatccgacagaggaggcatgtttcga aactaatatttgaaaagcctacacttcaggactccgggtcttacatgtgtgttgtttcatttggctccagaaacattact caatttacaaaagttacgttcaatgataaagtgatacgttttgctgcaacctcgggcaggatagaagtatacgggaacgg atattggggaactgtctgtttaaacggactaacggacaatgaaatatcgaccatctgtaatacgtttggattcagattcg ggggaattatgcacaatgcatgggttaaatatcacttcgctcatacagacgtaggaccagtcatggttacggggttacaa tgcccacctaatgcgaccgactttagtttgtgctctcataatggttttggcaatctttgttgcggttgtaatcacagtca tgatctggccataaggtgtcacgatggacctgtcgaggaggaaagtcggagaattcggctatctggatatggccgaaatg ataaaggtcgcgtggaacttatgcttaatggaagttggatactaattaatccttactggctacagtcccctgaggctaac atgttctgtaaaatgttgggatacagacatggtggcgaacctattttgaaggagaaagtcccaccaactgttgggactgt cttaattgagtttataacttgtccttacgatgctgttacaataagtaattgctcagtgaagtacagatcaggagccaaaa tgtccggtaacgcacgtggcggaggcattgtttgtaggaaagagccattgaaagttccaacaataccatttcgaaaaaga aggaattttgagggagtgaagagactgcagtattataaagatggtttatgggggacagtgtgcggtgcctatattggtta tccggaagccaatatgatttgctccatgatgggattcaagcatggtggaaaattggtcatgaaatataagaaaaaatggt cttaccgaggacttggaccaattattttaaagtacctggactgtccaataaatgccacagatatctctcagtgtccgttc agaaattacacttcgcacgaccatcgatcgagatgctatttatacagtgatcacaggagggatattagtatttcttgcaa taagaaaccagtgaaaccgcaagatattccagtaagactcaagggttctaatgcaaacagcggactactggaggtctatc ataacaaaagttggctaattgttccttcatattccggagaccctaaacttgcatcggtggtatgtcggcaacttggatac aggtcgggaggtgaactgtacaagaacaacacctgtataaatggtatttgcaaagtaaaagagtcattgtacggcagtac gggatgcacaggcaaagaagagaacctcggacaatgtgaaggattgcagtggttaccaggctggcctatgaatgggcaac cgatgggaatacgctgttacgtggaaaatgaaaagccatttgaaatacaaaacacacttaatcagactcatgaaggtgag gttatttttgctaaagacgacgaggagtacattgttattgctaccctttgggatgaaattcatgcaagagcgttctgcag atcgttgggatacatgtatatggtcattatccatatttgtcatctttggaatccgtttagatggcgccacataaatgatt aa |
|
Protein
| Protein ID | pfu_aug2.0_1492.1_08403.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1492.1_08403.t1 MSSEIKVTGCDSSTELKRWLLHASRRCLLSWAPGLTPISGVRFFSYGGDNQYRYNGLAELLYPVVNAYGGTVGERTILRC RVKTDEAPEINWYKKALENTPCSMRHTQLRTAEGLFCLEDRSRSHIRQRRHVSKLIFEKPTLQDSGSYMCVVSFGSRNIT QFTKVTFNDKVIRFAATSGRIEVYGNGYWGTVCLNGLTDNEISTICNTFGFRFGGIMHNAWVKYHFAHTDVGPVMVTGLQ CPPNATDFSLCSHNGFGNLCCGCNHSHDLAIRCHDGPVEEESRRIRLSGYGRNDKGRVELMLNGSWILINPYWLQSPEAN MFCKMLGYRHGGEPILKEKVPPTVGTVLIEFITCPYDAVTISNCSVKYRSGAKMSGNARGGGIVCRKEPLKVPTIPFRKR RNFEGVKRLQYYKDGLWGTVCGAYIGYPEANMICSMMGFKHGGKLVMKYKKKWSYRGLGPIILKYLDCPINATDISQCPF RNYTSHDHRSRCYLYSDHRRDISISCNKKPVKPQDIPVRLKGSNANSGLLEVYHNKSWLIVPSYSGDPKLASVVCRQLGY RSGGELYKNNTCINGICKVKESLYGSTGCTGKEENLGQCEGLQWLPGWPMNGQPMGIRCYVENEKPFEIQNTLNQTHEGE VIFAKDDEEYIVIATLWDEIHARAFCRSLGYMYMVIIHICHLWNPFRWRHIND |
|