Gene
| Gene Model ID | pfu_aug2.0_15.1_16696 |
|---|---|
| Locus | scaffold15.1 : 108336 ... 109006 : + |
| To GenomeBrowser | scaffold15.1:108336..109006 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_3272.1_01386 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16696.t1 | 2 | 1 | zf-CCHC_2 | 89 | 111 | 5.0e-06 | 25.9 | 2.4e-06 | 0.0039 | 16.6 |
| pfu_aug2.0_15.1_16696.t1 | 2 | 1 | zf-CCHC | 93 | 108 | 1.0e-16 | 59.9 | 5.4e-11 | 8.9e-08 | 31.7 |
| pfu_aug2.0_15.1_16696.t1 | 2 | 2 | zf-CCHC_2 | 109 | 133 | 5.0e-06 | 25.9 | 1.3e-05 | 0.022 | 14.2 |
| pfu_aug2.0_15.1_16696.t1 | 2 | 2 | zf-CCHC | 116 | 132 | 1.0e-16 | 59.9 | 2.4e-11 | 4.0e-08 | 32.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16696.t1 | gi|426396452|ref|XP_004064455.1| | PREDICTED: zinc finger CCHC domain-containing protein 13-like [Gorilla gorilla gorilla] | 1.0e-06 |
| pfu_aug2.0_15.1_16696.t1 | gi|675778958|ref|XP_003824438.2| | PREDICTED: LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 13 [Pan paniscus] | 1.0e-06 |
| pfu_aug2.0_15.1_16696.t1 | gi|340719027|ref|XP_003397959.1| | PREDICTED: CCHC-type zinc finger protein CG3800 [Bombus terrestris] | 1.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16696.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16696.t1 atgtgcttcataggagacacaactaagatgacttctcaacaagttgctgatattgatttaaccaactttgaatttcaatg gccaaacggcaatgtacaacagcctgcagacaacaaaatggacgacatccatagcaattgtcagcgcatgactgccatga tggaagatgtacagacatccatttccaagatgcaagccgacatccatacattgatggataacaagagaaatgcagaagaa ggagacgaaccacccaagaagaaagccagatacgtatgttacaattgcaatgaagagggacactttgctaccgaatgtcc tcagccgcccaagaaacagaacgacatttgctacaagtgccaaggcacgggacactgggccagagactgtcctgaacaac aggaatacaacacgtatccgggacccaacaactatggacctaacaactacaggccaaattaccccagacccatctatgga gcaaacagaggacgacccatctatggagcaaatagaggacgcccacctatggcgagtcagaatgtgaggccacagtacag tgcatag |
|
Protein
| Protein ID | pfu_aug2.0_15.1_16696.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16696.t1 MCFIGDTTKMTSQQVADIDLTNFEFQWPNGNVQQPADNKMDDIHSNCQRMTAMMEDVQTSISKMQADIHTLMDNKRNAEE GDEPPKKKARYVCYNCNEEGHFATECPQPPKKQNDICYKCQGTGHWARDCPEQQEYNTYPGPNNYGPNNYRPNYPRPIYG ANRGRPIYGANRGRPPMASQNVRPQYSA |
|