Gene
| Gene Model ID | pfu_aug2.0_15.1_16698 |
|---|---|
| Locus | scaffold15.1 : 158913 ... 181827 : - |
| To GenomeBrowser | scaffold15.1:158913..181827 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_41741.1_34213 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16698.t1 | 2 | 1 | FANCI_S1 | 54 | 234 | 0.0 | 176.9 | 0.0 | 0.0 | 176.6 |
| pfu_aug2.0_15.1_16698.t1 | 5 | 1 | FANCI_HD2 | 168 | 196 | 0.0 | 161.0 | 0.1 | 380.0 | 0.0 |
| pfu_aug2.0_15.1_16698.t1 | 2 | 1 | FANCI_S2 | 245 | 406 | 0.0 | 173.3 | 0.0 | 0.0 | 172.5 |
| pfu_aug2.0_15.1_16698.t1 | 5 | 2 | FANCI_HD2 | 290 | 338 | 0.0 | 161.0 | 0.048 | 180.0 | 1.0 |
| pfu_aug2.0_15.1_16698.t1 | 5 | 3 | FANCI_HD2 | 420 | 472 | 0.0 | 161.0 | 1.3e-21 | 4.9e-18 | 65.0 |
| pfu_aug2.0_15.1_16698.t1 | 2 | 2 | FANCI_S1 | 469 | 501 | 0.0 | 176.9 | 1.2 | 4600.0 | -3.3 |
| pfu_aug2.0_15.1_16698.t1 | 5 | 4 | FANCI_HD2 | 473 | 599 | 0.0 | 161.0 | 8.6e-33 | 3.2e-29 | 101.7 |
| pfu_aug2.0_15.1_16698.t1 | 1 | 1 | FANCI_S3 | 621 | 776 | 5.9e-25 | 87.9 | 5.9e-28 | 2.2e-24 | 86.0 |
| pfu_aug2.0_15.1_16698.t1 | 5 | 5 | FANCI_HD2 | 716 | 755 | 0.0 | 161.0 | 0.23 | 870.0 | -1.2 |
| pfu_aug2.0_15.1_16698.t1 | 2 | 2 | FANCI_S2 | 720 | 749 | 0.0 | 173.3 | 1.6 | 5900.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16698.t1 | gi|284005541|ref|NP_001164682.1| | Fanconi anemia, complementation group I [Xenopus laevis] | 0.0 |
| pfu_aug2.0_15.1_16698.t1 | gi|548397059|ref|XP_005737695.1| | PREDICTED: Fanconi anemia group I protein-like isoform X4 [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_15.1_16698.t1 | gi|548397055|ref|XP_005737694.1| | PREDICTED: Fanconi anemia group I protein-like isoform X3 [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_15.1_16698.t1 | gi|554865700|ref|XP_005942890.1| | PREDICTED: Fanconi anemia group I protein-like isoform X4 [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_15.1_16698.t1 | gi|554865698|ref|XP_005942889.1| | PREDICTED: Fanconi anemia group I protein-like isoform X3 [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16698.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16698.t1 atggataaagttataccccttgcagaggaaggcagcatagaaaaattatcagaaatcctaaaaggtgatatagaaaaaga gaggaggagagtcctattgcttttagggccaatagccctgaacttgagaggggacagtgatggaaagaagatctgtgtaa cgttgtacaggcgatgtattaacgtcctagaaaaaagtgaactgtccagtaaactatcatctgacatcctggctgtactt atgattgaggcagattccttgaatggtccagggctagcggagctgtcctacctatatgtagacatggttaaaaatgggga caccaactctgggaagggattggagctactacccaagatactgtctgccttagccatagaggaaaatatatgttacagtg gcagtaatatgtgtgggagtgactataaaggacacatacttaacagtctgtgttcgtgcaaatggagttcagagagtgtg ttacacttagctgccatgttcaaggacgtaaccttgacaacagaggaactcaaatttgtgatagagaaagttctcagaat gatgaaggaactggagcttccagatttacctgccttggtctatcagctgttgctattggcaaccaaaggacacaaaaagt tagttttggaaggaattgcagaattttttgtagagcaagacaaggcataccaaaacaaatcaactacggaatgcagtgtt catggatgggaccatgtagtgcagggcctggttcagttaggatttctcctgatggacgcgtttggacctaaggcatcgtt tggtaggacagaagtaacctcccctcagacaggacccacacacagggcgtgtcagctcggtagtaagatactcactaaga cattcaaggcccaccagatggtgagggcagagattttagagcagatttttaacagagttgtgaccaagaccagtgctcca gtctgtcatttcctagacctgctgtctacaaccgtgacatcgttcccacagatcctgttagaatgtacccctaagatccg agagacatttgattatttatcgttcctgaccccaaacacggcacaggagctgcttagagccattcaaccattactgaaaa tcagtgttacccttagagatgccctaattctggtccttagaaaagcaatgttctcaaaacagctagattcccgtacgatt ggagtgagtggattcctgatgattctgaagcagttccgagtgttaggaggactacagtcaagtcagaccagccagtcgtt ctcctttagtcaaataacggtagatgtccatgctcgatgtaatcctgcaagtaacgaagcattatgtctggagataatgg gaaatcttcgtagggtcctcacacagcaagcagatgtcagacttatgctgtatcaggcacatttactatgctgcgtacag ttatctctacgtaaagtaatggacattcagcgtcagacgcaggaggaagacgaggactgtgaggataacatggaggacat agggaggatgcagggagaactggaggatatgatggaatcactagtgcacaggatgattaagtcagaacttgaggactttg aactggacaagtcagcagatttttctttagccggtagtgtaggagttaagaacaacatttttgctatcttagtactggga gtgtatgaaacattgatggagtataacttccagtctggacagctgtgtgaatcaagcctgactgagattatccagttgta tgagaatcataaaaagctgactgatatactgagagagaaagtcagcagtgctgccggcaaaaaaggtgggaaaatatcaa ctggtaaaacaccacatagtctgctgtctgtaggatgtgtggtctccatggtagaaactgtactgggagatacagctccg agtaacagggaaacagtatccatcctacaggagaattctgatttcaagaaatacttgatgggtgtggcattacagaagct acagcagattcaggataagggggcgtgtgatggggcggagggtagtgataaaaataaactactcaagcacctacggtctc tgggaagggtccttctgcagttttatgcagagaatcagaaatctagcgagggaaggaagaataaatgtaagataatatac agtcagtgtctggacggcttggtggtcatacttaatataataactcacagataccctgatcatctcacacacagccttag tcaaatggctgaatccagtaaaacagatgaccaagaaattatgctttcacacatcaagaaataccagaaaatgcttactg taacatcaggaaataccaggatgcaaaaactcaaggtcctctaccaagtgtgtgttttttgggccgatcggtcaacaaat atggccaccgtgggctctgattggctgacgcatttacgacttctcctctgcaaccgctgcacagaatttcataaaaccct acaggaagcatacactcaagatcctctaccaagcgtgtgttttcataccgagcggtcaacaaatatgactgccgagggct atgattggataacacatttttga |
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Protein
| Protein ID | pfu_aug2.0_15.1_16698.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16698.t1 MDKVIPLAEEGSIEKLSEILKGDIEKERRRVLLLLGPIALNLRGDSDGKKICVTLYRRCINVLEKSELSSKLSSDILAVL MIEADSLNGPGLAELSYLYVDMVKNGDTNSGKGLELLPKILSALAIEENICYSGSNMCGSDYKGHILNSLCSCKWSSESV LHLAAMFKDVTLTTEELKFVIEKVLRMMKELELPDLPALVYQLLLLATKGHKKLVLEGIAEFFVEQDKAYQNKSTTECSV HGWDHVVQGLVQLGFLLMDAFGPKASFGRTEVTSPQTGPTHRACQLGSKILTKTFKAHQMVRAEILEQIFNRVVTKTSAP VCHFLDLLSTTVTSFPQILLECTPKIRETFDYLSFLTPNTAQELLRAIQPLLKISVTLRDALILVLRKAMFSKQLDSRTI GVSGFLMILKQFRVLGGLQSSQTSQSFSFSQITVDVHARCNPASNEALCLEIMGNLRRVLTQQADVRLMLYQAHLLCCVQ LSLRKVMDIQRQTQEEDEDCEDNMEDIGRMQGELEDMMESLVHRMIKSELEDFELDKSADFSLAGSVGVKNNIFAILVLG VYETLMEYNFQSGQLCESSLTEIIQLYENHKKLTDILREKVSSAAGKKGGKISTGKTPHSLLSVGCVVSMVETVLGDTAP SNRETVSILQENSDFKKYLMGVALQKLQQIQDKGACDGAEGSDKNKLLKHLRSLGRVLLQFYAENQKSSEGRKNKCKIIY SQCLDGLVVILNIITHRYPDHLTHSLSQMAESSKTDDQEIMLSHIKKYQKMLTVTSGNTRMQKLKVLYQVCVFWADRSTN MATVGSDWLTHLRLLLCNRCTEFHKTLQEAYTQDPLPSVCFHTERSTNMTAEGYDWITHF |
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