Gene
| Gene Model ID | pfu_aug2.0_15.1_16704 |
|---|---|
| Locus | scaffold15.1 : 309548 ... 329860 : + |
| To GenomeBrowser | scaffold15.1:309548..329860 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_3089.1_23170 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| wd repeat-containing protein 5 | GO:0001501 GO:0005671 GO:0031175 GO:0035064 GO:0035948 GO:0042800 GO:0043966 GO:0043981 GO:0043982 GO:0043984 GO:0043995 GO:0043996 GO:0046972 GO:0048188 GO:0051568 GO:0071339 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16704.t1 | 6 | 1 | WD40 | 53 | 88 | 0.0 | 180.9 | 2.1e-15 | 5.1e-12 | 45.1 |
| pfu_aug2.0_15.1_16704.t1 | 3 | 1 | eIF2A | 61 | 82 | 2.7e-08 | 33.7 | 0.059 | 150.0 | 2.0 |
| pfu_aug2.0_15.1_16704.t1 | 6 | 2 | WD40 | 94 | 131 | 0.0 | 180.9 | 9.1e-14 | 2.2e-10 | 39.9 |
| pfu_aug2.0_15.1_16704.t1 | 3 | 2 | eIF2A | 101 | 240 | 2.7e-08 | 33.7 | 4.4e-09 | 1.1e-05 | 25.2 |
| pfu_aug2.0_15.1_16704.t1 | 3 | 1 | Nup160 | 113 | 144 | 4.7e-10 | 38.2 | 1.1e-06 | 0.0027 | 15.8 |
| pfu_aug2.0_15.1_16704.t1 | 6 | 3 | WD40 | 135 | 187 | 0.0 | 180.9 | 8.2e-14 | 2.0e-10 | 40.1 |
| pfu_aug2.0_15.1_16704.t1 | 3 | 2 | Nup160 | 172 | 200 | 4.7e-10 | 38.2 | 0.0012 | 2.9 | 5.9 |
| pfu_aug2.0_15.1_16704.t1 | 6 | 4 | WD40 | 192 | 230 | 0.0 | 180.9 | 9.4e-10 | 2.3e-06 | 27.2 |
| pfu_aug2.0_15.1_16704.t1 | 3 | 3 | Nup160 | 215 | 243 | 4.7e-10 | 38.2 | 9.3e-07 | 0.0023 | 16.1 |
| pfu_aug2.0_15.1_16704.t1 | 6 | 5 | WD40 | 234 | 275 | 0.0 | 180.9 | 2.8e-10 | 7.0e-07 | 28.9 |
| pfu_aug2.0_15.1_16704.t1 | 3 | 3 | eIF2A | 262 | 293 | 2.7e-08 | 33.7 | 0.24 | 600.0 | 0.0 |
| pfu_aug2.0_15.1_16704.t1 | 6 | 6 | WD40 | 280 | 289 | 0.0 | 180.9 | 0.49 | 1200.0 | -0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16704.t1 | gi|560990854|ref|XP_006217579.1| | PREDICTED: WD repeat-containing protein 5, partial [Vicugna pacos] | 0.0 |
| pfu_aug2.0_15.1_16704.t1 | gi|472384151|ref|XP_004411449.1| | PREDICTED: WD repeat-containing protein 5 [Odobenus rosmarus divergens] | 0.0 |
| pfu_aug2.0_15.1_16704.t1 | gi|586466312|ref|XP_006863773.1| | PREDICTED: WD repeat-containing protein 5 [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_15.1_16704.t1 | gi|16554627|ref|NP_060058.1| | WD repeat-containing protein 5 [Homo sapiens] | 0.0 |
| pfu_aug2.0_15.1_16704.t1 | gi|466083599|ref|XP_004285059.1| | PREDICTED: WD repeat-containing protein 5 [Orcinus orca] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16704.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16704.t1 atgagtacagagggtggaaagatgccggagcctactgacatcaagcctcctgtctccaccaccaccagtgccccgccagc cacccaggctgccacacccactactgcagccccacctgttaaatcccagtcacaatcaatgaaacccaactatactttaa aatttactatggctggacacaccaaagcagtttcatcagttaaatttagtcctaatggagaatggcttgctagctcctct gctgataaactgatcaagatttggggagcatatgacgggaaatttgagaaaacaatcagtgggcacaaactcggaatctc agatatagcctggtccactgacagtcgtcttctggtcagtgcatctgatgacaaaacactcaaaatctgggactttgcca cgggtaaatgtatgaagacgttaaaaggccataccaactatgtgttctgctgtaactttaatccacaatcaaatctcatt gtatcaggatcggtacatttcaacagagatggatccttgattgtctccagtagttatgatggtttatgtcgaatatggga tacagcatcaggtcaatgtttaaagacgttgatagatgatgacaatccccctgtatcatttgtcaaattttctccaaatg gaaaatatattttagctgcaaccttagataatacattaaagttatgggattacagtaaagggaagtgtctgaaaacttac acaggacataaaaatgaaaaatactgcatatttgccaacttctctgtcactggaggaaagtggattgtctccggatcaga ggacaacttagtgtatatatggaacttacaaacaaaggagatagtacaaaaactacagggtcatacagagaatcttgcct tcataaagttaaaataa |
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Protein
| Protein ID | pfu_aug2.0_15.1_16704.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16704.t1 MSTEGGKMPEPTDIKPPVSTTTSAPPATQAATPTTAAPPVKSQSQSMKPNYTLKFTMAGHTKAVSSVKFSPNGEWLASSS ADKLIKIWGAYDGKFEKTISGHKLGISDIAWSTDSRLLVSASDDKTLKIWDFATGKCMKTLKGHTNYVFCCNFNPQSNLI VSGSVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTENLAFIKLK |
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