Gene
| Gene Model ID | pfu_aug2.0_15.1_16707 |
|---|---|
| Locus | scaffold15.1 : 354340 ... 356194 : - |
| To GenomeBrowser | scaffold15.1:354340..356194 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_3089.1_23174 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16707.t1 | 4 | 1 | LRR_8 | 31 | 89 | 1.7e-19 | 69.2 | 2.5e-07 | 0.00037 | 20.1 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 1 | LRR_4 | 31 | 39 | 8.2e-18 | 63.6 | 1.4 | 2100.0 | -1.6 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 1 | LRR_6 | 55 | 68 | 1.6e-07 | 30.6 | 0.12 | 180.0 | 2.7 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 2 | LRR_4 | 56 | 91 | 8.2e-18 | 63.6 | 1.2e-08 | 1.7e-05 | 24.2 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 1 | LRR_1 | 56 | 76 | 1.3e-12 | 45.9 | 0.019 | 28.0 | 5.2 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 1 | LRR_7 | 58 | 71 | 3.2e-08 | 32.4 | 0.17 | 250.0 | 2.6 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 2 | LRR_8 | 79 | 136 | 1.7e-19 | 69.2 | 2.2e-10 | 3.2e-07 | 29.9 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 2 | LRR_1 | 79 | 100 | 1.3e-12 | 45.9 | 6.7e-05 | 0.099 | 12.7 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 2 | LRR_7 | 79 | 91 | 3.2e-08 | 32.4 | 0.0045 | 6.6 | 7.4 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 2 | LRR_6 | 79 | 89 | 1.6e-07 | 30.6 | 0.0061 | 9.1 | 6.7 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 3 | LRR_4 | 93 | 118 | 8.2e-18 | 63.6 | 1.8e-05 | 0.026 | 14.1 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 3 | LRR_8 | 102 | 159 | 1.7e-19 | 69.2 | 4.8e-11 | 7.2e-08 | 32.0 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 3 | LRR_1 | 102 | 118 | 1.3e-12 | 45.9 | 3.0e-05 | 0.045 | 13.7 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 3 | LRR_7 | 102 | 117 | 3.2e-08 | 32.4 | 0.00077 | 1.1 | 9.7 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 3 | LRR_6 | 102 | 115 | 1.6e-07 | 30.6 | 0.0051 | 7.5 | 6.9 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 4 | LRR_4 | 124 | 161 | 8.2e-18 | 63.6 | 2.5e-12 | 3.6e-09 | 36.0 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 4 | LRR_7 | 124 | 140 | 3.2e-08 | 32.4 | 0.00037 | 0.55 | 10.6 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 4 | LRR_6 | 124 | 137 | 1.6e-07 | 30.6 | 9.7e-05 | 0.14 | 12.2 |
| pfu_aug2.0_15.1_16707.t1 | 4 | 4 | LRR_8 | 125 | 161 | 1.7e-19 | 69.2 | 2.5e-09 | 3.7e-06 | 26.5 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 4 | LRR_1 | 126 | 142 | 1.3e-12 | 45.9 | 5.4e-05 | 0.08 | 13.0 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 5 | LRR_6 | 146 | 160 | 1.6e-07 | 30.6 | 0.0053 | 7.9 | 6.8 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 5 | LRR_7 | 147 | 161 | 3.2e-08 | 32.4 | 0.0093 | 14.0 | 6.4 |
| pfu_aug2.0_15.1_16707.t1 | 5 | 5 | LRR_1 | 148 | 164 | 1.3e-12 | 45.9 | 0.0064 | 9.5 | 6.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16707.t1 | gi|490603084|ref|WP_004468104.1| | hypothetical protein [Leptospira santarosai] | 2.0e-15 |
| pfu_aug2.0_15.1_16707.t1 | gi|695054591|ref|XP_009415430.1| | PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Musa acuminata subsp. malaccensis] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16707.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16707.t1 atgccgttatttaagaacgttaaagaattgttttcaaaggaagacagaagtaagaaagaagacaaagaaaagaaggtgga gaaaaagacaaaattgaaagaagtgaatctcccaaattatcagcaggctaatttggatgacttctttctgtcacttaagg tatcaaaaatacaaactttacagataaatgatacaaacttaactcgtctaccaagatctttgggtacgctcgtacacctc acagaattagatctgtccagaaacgttctttgttggttaccgaatgaaatggaaaatttaggaaagttggaaattcttaa cctttcatgcaataaatttacaagctttccagtcgtgttgaccaagataactactttgaaatcactggatttgagttcga ataacatatcagctttaccaactgctatgttaaaccttacaaagttaaagacacttagtctggagggaaacaaaatcaaa tcaccgttacattgtgagaggcagactttacaagcaatatttgatactctgaaacatgtgaagaaaggtgcatgtactag ttctgaacgacgtgacatgttggccaattggaaaccatattatactgaaaaaccacgaggtgtcaagagacttgccgatt tatgtacggactgcattctgtataatgaaatagactacatctcaggaatacatgtacctccggtggtaaagacttacttg accgaggaggaacgttgttgtactacatctaacctgtttcccaatctactgaagtgtagtgtatgtaagaagtacttcac aacaaaacataattttattcatcatgtatgttattag |
|
Protein
| Protein ID | pfu_aug2.0_15.1_16707.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16707.t1 MPLFKNVKELFSKEDRSKKEDKEKKVEKKTKLKEVNLPNYQQANLDDFFLSLKVSKIQTLQINDTNLTRLPRSLGTLVHL TELDLSRNVLCWLPNEMENLGKLEILNLSCNKFTSFPVVLTKITTLKSLDLSSNNISALPTAMLNLTKLKTLSLEGNKIK SPLHCERQTLQAIFDTLKHVKKGACTSSERRDMLANWKPYYTEKPRGVKRLADLCTDCILYNEIDYISGIHVPPVVKTYL TEEERCCTTSNLFPNLLKCSVCKKYFTTKHNFIHHVCY |
|