Gene
| Gene Model ID | pfu_aug2.0_15.1_16713 |
|---|---|
| Locus | scaffold15.1 : 515464 ... 531368 : + |
| To GenomeBrowser | scaffold15.1:515464..531368 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_16334.1_03700 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| procollagen galactosyltransferase 1 | GO:0005783 GO:0016740 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16713.t1 | 3 | 1 | Glyco_tranf_2_4 | 50 | 164 | 6.1e-08 | 32.8 | 8.0e-11 | 3.0e-07 | 30.6 |
| pfu_aug2.0_15.1_16713.t1 | 3 | 2 | Glyco_tranf_2_4 | 343 | 360 | 6.1e-08 | 32.8 | 1.5 | 5500.0 | -2.3 |
| pfu_aug2.0_15.1_16713.t1 | 1 | 1 | Glyco_transf_25 | 347 | 528 | 3.0e-34 | 118.4 | 2.4e-36 | 8.8e-33 | 113.6 |
| pfu_aug2.0_15.1_16713.t1 | 3 | 3 | Glyco_tranf_2_4 | 434 | 462 | 6.1e-08 | 32.8 | 2.0 | 7300.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16713.t1 | gi|676453289|ref|XP_009053307.1| | hypothetical protein LOTGIDRAFT_231876 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_15.1_16713.t1 | gi|311249255|ref|XP_003123541.1| | PREDICTED: procollagen galactosyltransferase 1 [Sus scrofa] | 0.0 |
| pfu_aug2.0_15.1_16713.t1 | gi|505846892|ref|XP_004616918.1| | PREDICTED: procollagen galactosyltransferase 1 [Sorex araneus] | 0.0 |
| pfu_aug2.0_15.1_16713.t1 | gi|585704754|ref|XP_006898321.1| | PREDICTED: procollagen galactosyltransferase 1 [Elephantulus edwardii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16713.t1 atggaagcgaagctgacgtgtcgccttttcctgggcataatatgtcttacttttgcttacttttcagtttttgttaaatg tggagacgatgatggttcttacgaagagaaattcttcgaaccaactgtaatgattgcaattttggtccgaaacaaaggtt ttattctgccttggtttttgggtcatctagaaaaactgaattatccaaaggataggataacactttggataagaagtgac cataatgtggacaactcctcagtcatcctgaatgagtgggtaacggcagtgagagcagaataccatgacatagatttaaa gatagatgactcagtaacagagtatgaaggagagaaaacaccctgtgactggacagatgagagatttaacaaagttattg ctcttagagaagaagcattagttacagcaagaaaaatttgggcagattacctatttatgattgatgcagatgttattcta gagaatacagatacactaaatgtgctgttagaggtgaagcagactgtagttgcaccaatgatgaattccagtgtagggac actttactccaatttttggggaggcatgacagacgagggatattacaagagagtctctggctattttgacgttgtaaaga gagagaagataggagtgtttgaatgtcccatggttcactctgctatactgatagacatgaggcacatcgttaccgaacag ttttcctactcacaaaagcctgctggatatgggggaccacatgatgatatcattatttttgcatattctgtaaaagccac aggagagaaaatgcacgttataaacagtgaatactttgggataataatggttccattagatgatttcaacacgatagagg atgaagctgaacagtttgtctttgctaagttagaggccatggatgcaaacgagattgatgaagtgagaatagggagaaga tatccagtatttaggccacctttaatcatgtcaccatacattgatgtacctgagaagataccagataaattaggttttga tgagatttatatgataaatcttaaaagacggccagagagaagagttaggatgataaagtctttacaagaactgggactga catctaaagttatagatgctattgatggaaaggaactgaatacaacatatctgaagaaacttggagtagagatgctgcca ggttatgctgatccctacgtaggaaggaaactaactatgggagagattggatgttttctgagccattacttcatatggaa agatatattagagaaaggatataaaaaagtgattgtctttgaggatgatgtaagatttgagccttacttcagaacacgaa ccaagaatgtaatgaaagaagtagaagaaagagtaccagactgggaattattatatctaggaagaaagagaatgcgtcgg gacttagaaaagtatgtagatggcacagagaacctagtgtggccgagttactcctactggactctgggatatgcactctc agataaaggtgccaagaaactaatagaccaggaaccgttagggaaaatgatacccgtagacgagtacttacctatcatgt ttaatcatcatccagaaaattcttggcgactcagttttgaacctaggaatttacgagggctttctgtgcacccattctat atttatcccacccactacacgggagagccaaactatatatctgatactgaggattctcacgtcataccccctgatcaaga aatggaggaaaaaatgtccagggagaaagacgagttatga |
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Protein
| Protein ID | pfu_aug2.0_15.1_16713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16713.t1 MEAKLTCRLFLGIICLTFAYFSVFVKCGDDDGSYEEKFFEPTVMIAILVRNKGFILPWFLGHLEKLNYPKDRITLWIRSD HNVDNSSVILNEWVTAVRAEYHDIDLKIDDSVTEYEGEKTPCDWTDERFNKVIALREEALVTARKIWADYLFMIDADVIL ENTDTLNVLLEVKQTVVAPMMNSSVGTLYSNFWGGMTDEGYYKRVSGYFDVVKREKIGVFECPMVHSAILIDMRHIVTEQ FSYSQKPAGYGGPHDDIIIFAYSVKATGEKMHVINSEYFGIIMVPLDDFNTIEDEAEQFVFAKLEAMDANEIDEVRIGRR YPVFRPPLIMSPYIDVPEKIPDKLGFDEIYMINLKRRPERRVRMIKSLQELGLTSKVIDAIDGKELNTTYLKKLGVEMLP GYADPYVGRKLTMGEIGCFLSHYFIWKDILEKGYKKVIVFEDDVRFEPYFRTRTKNVMKEVEERVPDWELLYLGRKRMRR DLEKYVDGTENLVWPSYSYWTLGYALSDKGAKKLIDQEPLGKMIPVDEYLPIMFNHHPENSWRLSFEPRNLRGLSVHPFY IYPTHYTGEPNYISDTEDSHVIPPDQEMEEKMSREKDEL |
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