Gene
| Gene Model ID | pfu_aug2.0_15.1_16714 |
|---|---|
| Locus | scaffold15.1 : 533004 ... 548805 : + |
| To GenomeBrowser | scaffold15.1:533004..548805 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_66288.1_20386 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| procollagen galactosyltransferase 1 | GO:0005783 GO:0016740 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16714.t1 | 1 | 1 | Anp1 | 43 | 194 | 1.3e-08 | 34.3 | 8.9e-12 | 2.2e-08 | 33.5 |
| pfu_aug2.0_15.1_16714.t1 | 2 | 1 | Glyco_tranf_2_4 | 65 | 184 | 6.9e-10 | 39.1 | 2.2e-12 | 5.4e-09 | 36.2 |
| pfu_aug2.0_15.1_16714.t1 | 2 | 1 | Glyco_transf_25 | 164 | 187 | 1.4e-30 | 106.4 | 2.3 | 5600.0 | -3.3 |
| pfu_aug2.0_15.1_16714.t1 | 2 | 2 | Glyco_tranf_2_4 | 345 | 371 | 6.9e-10 | 39.1 | 0.61 | 1500.0 | -0.5 |
| pfu_aug2.0_15.1_16714.t1 | 2 | 2 | Glyco_transf_25 | 348 | 530 | 1.4e-30 | 106.4 | 2.4e-32 | 6.0e-29 | 101.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16714.t1 | gi|73986206|ref|XP_541950.2| | PREDICTED: procollagen galactosyltransferase 1 [Canis lupus familiaris] | 0.0 |
| pfu_aug2.0_15.1_16714.t1 | gi|511882376|ref|XP_004761071.1| | PREDICTED: procollagen galactosyltransferase 1 [Mustela putorius furo] | 0.0 |
| pfu_aug2.0_15.1_16714.t1 | gi|511993500|ref|XP_004814395.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16714.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16714.t1 atgaatgttccacctggaaagaggatgaaccctattggttttcaagagcgtgacagggcggaaaatagccatacaaccat gaagtttgttttactcgggactctaatcttcttgggaactatgttccaaaatataacccaaagtgagaatgattctcaac aaaacccatttgtaatggtcgctattttggtaagaaacaaggcgttcatacttccatggttcctagggcatctagagaga ctgaattatcccaagagtaggatcactttgtggataagaagtgatcataatgaggacagttcctctgcaatcctcaaaca atgggtgtcagctgtcagagagcggtacaatgacattgatctactgactgacgattcccttacagattatgaagaagcaa ctggtccgtgcgcctggacaaagcaaagatttgacagagttatcgcccttagacaggaggctttagaaactgcacggaga gctggaatggattacatttttatgttagatgccgacgttattctggaaaacaggaataccctgaaagcgctaataagttc caaaaggactgtagtaggaccaatattgaaatccagtgagggtgatgcctactcaaatttctggggagcaatgacggaca tgggattttataaacgatctgtcgactattttcaaatcttggacagagagaaaaaaggagttttcaaatgtgccatggtc cacacagctgtgctgatagacctaagaaagcctgtcaccaaacggttttcctactcgcataaacctaaatcattcaatgg accaaccgatgatatcatcatatttgctcaaaatgtcaagaatgcaggaaagaagatgtatatattgaacacggagtact ttggaatcgtaatgaacccgcttgaagatgatggaacattacacgatgaggaagatcgattcataaccatcagaagtgac gctatggtgaacaatcgtgcgttatacagatctgtacatctagaggaggaatctgaacctacactggatatgatgggatt tgatcagatatacataatcaatttaaaaagacgaccagagagacggaccagaatgttaaacatgctgaaaaatcatggtg taaaggctaaagttacggaggccgtcgatggacaaacgctgaacacgacgtatctgaagaatttgggagtacgcatgttg cctggttacgtcgatcctcattggggaagagaattaaccctaggtgaagttggctgttttcttagtcattatttcatctg gaaagatataatggacaataatcaccgaagagtgattatatttgaggacgacgcccggttagatccttccttcaggagga gaacgttacagatgatgaaggaggcggagaaagaggtaccagactgggatctcatatatctcggtagaaagcagatgaca aatgacaaagaagagagagttcccggaaccacatcccttttatggccgtcctactcctactggcagctagcatatgtgct ttcaaatcgaggcgcccggaagttgatagatcagaaaccacttcgtaagatgattcccgtggacgagtatattcctgtca tgattgaccatcatccaaaagattcttggaatattaacttctcgccaagaaatctacgagccatgtcgatagaaccgctg gtagcttatccgacccattataaaggcgatcaaaactacatctctgacactgaattttcgttcctgataccttctgatct gaatagccaagaaaagaatgaagatttttacactcgaacagcagatattagtcatgcaaaagacgagttttga |
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Protein
| Protein ID | pfu_aug2.0_15.1_16714.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16714.t1 MNVPPGKRMNPIGFQERDRAENSHTTMKFVLLGTLIFLGTMFQNITQSENDSQQNPFVMVAILVRNKAFILPWFLGHLER LNYPKSRITLWIRSDHNEDSSSAILKQWVSAVRERYNDIDLLTDDSLTDYEEATGPCAWTKQRFDRVIALRQEALETARR AGMDYIFMLDADVILENRNTLKALISSKRTVVGPILKSSEGDAYSNFWGAMTDMGFYKRSVDYFQILDREKKGVFKCAMV HTAVLIDLRKPVTKRFSYSHKPKSFNGPTDDIIIFAQNVKNAGKKMYILNTEYFGIVMNPLEDDGTLHDEEDRFITIRSD AMVNNRALYRSVHLEEESEPTLDMMGFDQIYIINLKRRPERRTRMLNMLKNHGVKAKVTEAVDGQTLNTTYLKNLGVRML PGYVDPHWGRELTLGEVGCFLSHYFIWKDIMDNNHRRVIIFEDDARLDPSFRRRTLQMMKEAEKEVPDWDLIYLGRKQMT NDKEERVPGTTSLLWPSYSYWQLAYVLSNRGARKLIDQKPLRKMIPVDEYIPVMIDHHPKDSWNINFSPRNLRAMSIEPL VAYPTHYKGDQNYISDTEFSFLIPSDLNSQEKNEDFYTRTADISHAKDEF |
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