Gene
| Gene Model ID | pfu_aug2.0_15.1_16719 |
|---|---|
| Locus | scaffold15.1 : 653894 ... 655287 : + |
| To GenomeBrowser | scaffold15.1:653894..655287 |
| Genes list of scaffold | scaffold15.1 |
| Synonym | pfu_aug1.0_24.1_50554 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tripartite motif-containing isoform cra_a | GO:0002376 GO:0005488 GO:0016881 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_15.1_16719.t1 | 4 | 1 | zf-B_box | 30 | 37 | 4.1e-12 | 45.7 | 0.76 | 940.0 | -0.2 |
| pfu_aug2.0_15.1_16719.t1 | 2 | 1 | zf-RING_UBOX | 32 | 72 | 9.4e-07 | 28.4 | 7.6e-10 | 9.4e-07 | 28.4 |
| pfu_aug2.0_15.1_16719.t1 | 4 | 2 | zf-B_box | 71 | 81 | 4.1e-12 | 45.7 | 0.41 | 510.0 | 0.6 |
| pfu_aug2.0_15.1_16719.t1 | 4 | 3 | zf-B_box | 106 | 142 | 4.1e-12 | 45.7 | 3.4e-08 | 4.2e-05 | 23.3 |
| pfu_aug2.0_15.1_16719.t1 | 2 | 2 | zf-RING_UBOX | 122 | 132 | 9.4e-07 | 28.4 | 1.8 | 2200.0 | -1.6 |
| pfu_aug2.0_15.1_16719.t1 | 4 | 4 | zf-B_box | 160 | 199 | 4.1e-12 | 45.7 | 1.6e-10 | 1.9e-07 | 30.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_15.1_16719.t1 | gi|56749780|sp|Q80VI1.1|TRI56_MOUSE | E3 ubiquitin-protein ligase TRIM56 | 5.0e-14 |
| pfu_aug2.0_15.1_16719.t1 | gi|41235779|ref|NP_958761.1| | E3 ubiquitin-protein ligase TRIM56 [Mus musculus] | 1.0e-13 |
| pfu_aug2.0_15.1_16719.t1 | gi|528504199|ref|XP_005158135.1| | PREDICTED: transcription intermediary factor 1-alpha isoform X2 [Danio rerio] | 5.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_15.1_16719.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16719.t1 atgacatattcgaggcggagtttatgtcaatttaaactcaacatgcgcttcgataatcccacatttttaacagacatgtc cgatatttacttgtgtcgcatctgcaaagagaaattcaacggtatagaccatgtgcctattctattaccttgtcttcacg tttttgggaaaggatgtttgataaaggaaatcaatgcaggcaagttcaaatgtccggaatgttttctaagcgttgatgcc cataatataacagacaacaagaggtttccaattgtcaagaactttatagagacaccagcaacatatcatggtggtcgatg tggtttttgtgaaatggaaaaaagtgaatacttttgtttcgcgtgttcctgtgcgctgtgcaagaactgttatgatatgc atttcaaattcagattcattacccatattatcgtcggtattggcacacacaagtttgtaaatgaaaatcagatacaaaga gaagtgtgtcaacaacactttcctgaagaatgtgaaatgttctgcacgaaatgtaatgaaactatttgttcaacatgtgc agttatggaacataaaaatcataagattctgcaaattgaggaaaagatcaaatctgtaacaaagaaacttgcgaaggtaa agaaaagaagtatattgtttgtcgaagaaatagaaaaggcacaggcaatccattctagttccagacgcccaacatctgaa agtttacaaagagacaatatgagtaaaactttagaatcagctgaagctattctgcagagatgtaactatgcgatagatat ttctattcttgttgctgttgaacagagacttgaagatttagattataaatttgacgaattgtcaggaaagaagacttcca ctgcagcagaagtaattgaatcgattgaaggaagctgcgaagtttcacatactaaaacgagactaacttgttcaaactga |
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Protein
| Protein ID | pfu_aug2.0_15.1_16719.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_15.1_16719.t1 MTYSRRSLCQFKLNMRFDNPTFLTDMSDIYLCRICKEKFNGIDHVPILLPCLHVFGKGCLIKEINAGKFKCPECFLSVDA HNITDNKRFPIVKNFIETPATYHGGRCGFCEMEKSEYFCFACSCALCKNCYDMHFKFRFITHIIVGIGTHKFVNENQIQR EVCQQHFPEECEMFCTKCNETICSTCAVMEHKNHKILQIEEKIKSVTKKLAKVKKRSILFVEEIEKAQAIHSSSRRPTSE SLQRDNMSKTLESAEAILQRCNYAIDISILVAVEQRLEDLDYKFDELSGKKTSTAAEVIESIEGSCEVSHTKTRLTCSN |
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