Gene
| Gene Model ID | pfu_aug2.0_150.1_00329 |
|---|---|
| Locus | scaffold150.1 : 349724 ... 402464 : - |
| To GenomeBrowser | scaffold150.1:349724..402464 |
| Genes list of scaffold | scaffold150.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase iii subunit rpc6 | GO:0001056 GO:0003677 GO:0005515 GO:0005666 GO:0005829 GO:0006359 GO:0006385 GO:0006386 GO:0032728 GO:0045089 GO:0051607 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_150.1_00329.t1 | 1 | 1 | RNA_pol_Rpc34 | 1 | 307 | 0.0 | 333.6 | 0.0 | 0.0 | 333.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_150.1_00329.t1 | gi|676485307|ref|XP_009063619.1| | hypothetical protein LOTGIDRAFT_183760 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_150.1_00329.t1 | gi|478519102|ref|XP_004433773.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ceratotherium simum simum] | 0.0 |
| pfu_aug2.0_150.1_00329.t1 | gi|532045521|ref|XP_005365564.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_150.1_00329.t1 | gi|345790127|ref|XP_857138.2| | PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoformX2 [Canis lupus familiaris] | 0.0 |
| pfu_aug2.0_150.1_00329.t1 | gi|33598952|ref|NP_006457.2| | DNA-directed RNA polymerase III subunit RPC6 isoform 1 [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_150.1_00329.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_150.1_00329.t1 atggcaagcacagaaccgtcggtagaggcagttgattatgaagaaagaatccttcagctgtgtcaggagaatccagatgg tatatcagatacagccatacagaaagaacttccacaatgtgatgcccagctgagggtcactaccatcaacaaattactgt ccacgggcaaaattgatctgatgaagagtggtagtaaactgatatacaaagcaaaaggtgtagatgtatcgagcaacctt aaattaggagacactcaggagaaactagtatatcagatcatcaaagaggctgggaacaagggaatatggatcagggatat ccgctacaagtgtaatcttcttctcactcaagtcaataaaatactcaaaaacctcgaaagtaggaaattaatcaaagctg tcaaatcagtggctgcctcaaagaagaaagtttacatgctgtacgaccttgagccagacaggtccgtgacaggaggggca tggtatagtgaccaggattttgaatcagagtttgtagaggttctcaatcaacagtgcctcaaatatttagagcaaaaggc aacaatatcaagggagagcaagagtgatccgatagcacagagaaatggctcctttgctccattagaagatgtatggaaat atatctcagaactaggaattagcaaggtccagctgtcaaaagaagacatagaaacaatattagatacacttatatacgat gggaaagtggagcgttccattgtggcaggagcagggagatcaggtgatggacagaataaactatatcgttctataaaccc acttgtcccacctacaggcttaatgaggatgccatgtggagcttgcccagtatttgaccagtgctatgagggaggagctg tctcacctacaaactgtgtatatatgaaggactggttatcaatgtaa |
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Protein
| Protein ID | pfu_aug2.0_150.1_00329.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_150.1_00329.t1 MASTEPSVEAVDYEERILQLCQENPDGISDTAIQKELPQCDAQLRVTTINKLLSTGKIDLMKSGSKLIYKAKGVDVSSNL KLGDTQEKLVYQIIKEAGNKGIWIRDIRYKCNLLLTQVNKILKNLESRKLIKAVKSVAASKKKVYMLYDLEPDRSVTGGA WYSDQDFESEFVEVLNQQCLKYLEQKATISRESKSDPIAQRNGSFAPLEDVWKYISELGISKVQLSKEDIETILDTLIYD GKVERSIVAGAGRSGDGQNKLYRSINPLVPPTGLMRMPCGACPVFDQCYEGGAVSPTNCVYMKDWLSM |
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