Gene
| Gene Model ID | pfu_aug2.0_1506.1_21654 |
|---|---|
| Locus | scaffold1506.1 : 55196 ... 75031 : + |
| To GenomeBrowser | scaffold1506.1:55196..75031 |
| Genes list of scaffold | scaffold1506.1 |
| Synonym | pfu_aug1.0_742.1_58230 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1506.1_21654.t3 | 1 | 1 | MMR_HSR1 | 6 | 119 | 5.2e-14 | 52.2 | 1.8e-17 | 8.7e-14 | 51.4 |
| pfu_aug2.0_1506.1_21654.t3 | 1 | 1 | MMR_HSR1_C | 217 | 294 | 1.2e-15 | 57.6 | 4.1e-19 | 2.0e-15 | 56.9 |
Transcript
| Transcript ID | pfu_aug2.0_1506.1_21654.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1506.1_21654.t1 atgttgtcagaagaacagctggatgagttagaagctttgaggtctatatatgacagtgatataacagagttgacagcaga tccaccatgtttcatgataaagttgaataatcttcagtcatatataaaaggtgtggtgagtttgaggttcacgatgcccc ctgactaccccaacgttaaaccctctatagagcttcctatgaggacagaggttataccaaggggagaccaacaacgactt gtacaatatctgaatcaaatggctgaggagaatgtggggatggctatggtatttacattggttgatgaggctgtaaattg gatcaatgaaaatgtagcagaagttgaaacacgagaagatcaccatgtaagaaagtga |
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| Transcript ID | pfu_aug2.0_1506.1_21654.t2 |
| Definition | - |
>pfu_aug2.0_1506.1_21654.t2 atgttgtcagaagaacagctggatgagttagaagctttgaggtctatatatgacagtgatataacagagttgacagcaga tccaccatgtttcatgataaagttgaataatcttcagtcatatataaaaggtgtggtgagtttgaggttcacgatgcccc ctgactaccccaacgttaaaccctctatagagcttcctatgaggacagaggttataccaaggggagaccaacaacgactt gtacaatatctgaatcaaatggctgaggagaatgtggggatggctatggtatttacattggttgatgaggctgtaaattg gatcaatgaaaatgtagcagaagttgaaacacgagaagatcaccatgaagacgtccatattcaagaggatgtaaccccta caaaaattgtggagccaaaagggaagcctagtgctggtaagtcgactttcttcaatgctgcaacaacacttgacttggcc agaactggagctcatcctttcaccaccatagaacctaatataggcaaggctttctactctataccgtgtccgtgtcgtag gttaacgggaacgtgcaatgcagctaatggtcacaactatgctggagatagaaacattcctgtattgttgaaggatgttg ctggtcttgtacctggggcatgggagggtaaaggtaagggaaatagattccttaacgacctgctagatgcagatgtactg attcacattgttgactcgtcagggcagaccaacgagaagggggagataactacagattatgatccagcatcagatataca atggctacaacaagaactacatcaatggatataccagaatgtattcagtaaatgggataacataatcaagcgcccacata gacttgttgatatgtttactggttaccatgccaacatagctaccatactcacagcttttcacaatgcagggataaatgaa agagagctatcatgtatttcaacttggaatgagtcagtattacatagaatagtagatcacttcctacaagtcaggtttcc tataatgctggtactgaataaagcagacactgagacgtcagtaaaaatcattgataggctgtccacggtccatgacaatg tgatacctgtgagtgcccagggtgagtgttacttacaaaagctgaccaaggacggtgctatacaatatacctcagggcag tcagactttgatattgtgtcagatttgaaattggatgatgccatcagagaaaagttagactttttagagaggacggtttt caaaaggtaa |
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| Transcript ID | pfu_aug2.0_1506.1_21654.t3 |
| Definition | - |
>pfu_aug2.0_1506.1_21654.t3 atgggagtcatcactaaagggaagcctagtgctggtaagtcgactttcttcaatgctgcaacaacacttgacttggccag aactggagctcatcctttcaccaccatagaacctaatataggcaaggctttctactctataccgtgtccgtgtcgtaggt taacgggaacgtgcaatgcagctaatggtcacaactatgctggagatagaaacattcctgtattgttgaaggatgttgct ggtcttgtacctggggcatgggagggtaaaggtaagggaaatagattccttaacgacctgctagatgcagatgtactgat tcacattgttgactcgtcagggcagaccaacgagaagggggagataactacagattatgatccagcatcagatatacaat ggctacaacaagaactacatcaatggatataccagaatgtattcagtaaatgggataacataatcaagcgcccacataga cttgttgatatgtttactggttaccatgccaacatagctaccatactcacagcttttcacaatgcagggataaatgaaag agagctatcatgtatttcaacttggaatgagtcagtattacatagaatagtagatcacttcctacaagtcaggtttccta taatgctggtactgaataaagcagacactgagacgtcagtaaaaatcattgataggctgtccacggtccatgacaatgtg atacctgtgagtgcccagggtgagtgttacttacaaaagctgaccaaggacggtgctatacaatatacctcagggcagtc agactttgatattgtgtcagatttgaaattggatgatgccatcagagaaaagttagactttttagagaggacggttttca aaaggtaa |
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Protein
| Protein ID | pfu_aug2.0_1506.1_21654.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1506.1_21654.t1 MLSEEQLDELEALRSIYDSDITELTADPPCFMIKLNNLQSYIKGVVSLRFTMPPDYPNVKPSIELPMRTEVIPRGDQQRL VQYLNQMAEENVGMAMVFTLVDEAVNWINENVAEVETREDHHVRK |
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| Protein ID | pfu_aug2.0_1506.1_21654.t2 |
| Definition | - |
>pfu_aug2.0_1506.1_21654.t2 MLSEEQLDELEALRSIYDSDITELTADPPCFMIKLNNLQSYIKGVVSLRFTMPPDYPNVKPSIELPMRTEVIPRGDQQRL VQYLNQMAEENVGMAMVFTLVDEAVNWINENVAEVETREDHHEDVHIQEDVTPTKIVEPKGKPSAGKSTFFNAATTLDLA RTGAHPFTTIEPNIGKAFYSIPCPCRRLTGTCNAANGHNYAGDRNIPVLLKDVAGLVPGAWEGKGKGNRFLNDLLDADVL IHIVDSSGQTNEKGEITTDYDPASDIQWLQQELHQWIYQNVFSKWDNIIKRPHRLVDMFTGYHANIATILTAFHNAGINE RELSCISTWNESVLHRIVDHFLQVRFPIMLVLNKADTETSVKIIDRLSTVHDNVIPVSAQGECYLQKLTKDGAIQYTSGQ SDFDIVSDLKLDDAIREKLDFLERTVFKR |
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| Protein ID | pfu_aug2.0_1506.1_21654.t3 |
| Definition | - |
>pfu_aug2.0_1506.1_21654.t3 MGVITKGKPSAGKSTFFNAATTLDLARTGAHPFTTIEPNIGKAFYSIPCPCRRLTGTCNAANGHNYAGDRNIPVLLKDVA GLVPGAWEGKGKGNRFLNDLLDADVLIHIVDSSGQTNEKGEITTDYDPASDIQWLQQELHQWIYQNVFSKWDNIIKRPHR LVDMFTGYHANIATILTAFHNAGINERELSCISTWNESVLHRIVDHFLQVRFPIMLVLNKADTETSVKIIDRLSTVHDNV IPVSAQGECYLQKLTKDGAIQYTSGQSDFDIVSDLKLDDAIREKLDFLERTVFKR |
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