Gene
| Gene Model ID | pfu_aug2.0_1522.1_08419 |
|---|---|
| Locus | scaffold1522.1 : 65166 ... 84775 : - |
| To GenomeBrowser | scaffold1522.1:65166..84775 |
| Genes list of scaffold | scaffold1522.1 |
| Synonym | pfu_aug1.0_8765.1_24473 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx10 | GO:0004386 GO:0005524 GO:0008152 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1522.1_08419.t1 | 1 | 1 | DEAD | 34 | 204 | 9.80909e-45 | 152.0 | 0.0 | 4.06377e-44 | 150.0 |
| pfu_aug2.0_1522.1_08419.t1 | 2 | 1 | Helicase_C | 278 | 350 | 1.49939e-43 | 146.5 | 1.2e-23 | 3.1e-20 | 71.8 |
| pfu_aug2.0_1522.1_08419.t1 | 2 | 1 | DUF4217 | 391 | 412 | 2.2e-19 | 68.7 | 0.045 | 110.0 | 2.4 |
| pfu_aug2.0_1522.1_08419.t1 | 2 | 2 | Helicase_C | 424 | 496 | 1.49939e-43 | 146.5 | 1.2e-23 | 3.1e-20 | 71.8 |
| pfu_aug2.0_1522.1_08419.t1 | 2 | 2 | DUF4217 | 537 | 600 | 2.2e-19 | 68.7 | 2.9e-21 | 7.1e-18 | 63.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1522.1_08419.t1 | gi|676487434|ref|XP_009064292.1| | hypothetical protein LOTGIDRAFT_81796, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1522.1_08419.t1 | gi|632974664|ref|XP_007903804.1| | PREDICTED: probable ATP-dependent RNA helicase DDX10 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1522.1_08419.t1 | gi|33416833|gb|AAH55481.1| | Ddx10 protein, partial [Mus musculus] | 0.0 |
| pfu_aug2.0_1522.1_08419.t1 | gi|27371129|gb|AAH23303.1| | Ddx10 protein, partial [Mus musculus] | 0.0 |
| pfu_aug2.0_1522.1_08419.t1 | gi|189533973|ref|XP_001922220.1| | PREDICTED: probable ATP-dependent RNA helicase DDX10 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1522.1_08419.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1522.1_08419.t1 atgctaccgattgatgtatcaaaaattaagcaattcacagactttccattgtcaaagaaaactctgcaaggtttgaagtt gtcaaaatttgacagacctacagaaatccagagagaggccataggactagctcttcagggaaatgacatacttggtgcgg ccaagactgggtctggtaaaacattggctttcctcttgcctgttcttgaatgtctgtaccaccaaaaatggagtcccatg gatggacttggtgccttgattatctctccaactcgggagctggcctaccaaacatttgaagtgttaaagagagtggggaa agctcatgatttctcagcaggacttgtcatagggggaaagctgctgaaggaggaatctaccagaataaatcgtacaaaca ttgtagtatgtacaccaggcagactgcttcaacatatggacgaaaccattaacttcagagcagactcactccaaatacta gttttagatgaggcagacaggattcttgatatggggtttgctaaggagatgaatgccataatagagaaccttcctaacac cagacaaactttacttttctcagccacacaaacaaagtcagtgaaggatttagctcgccttagtttacaagatccagtgt atgtgtcagttcatgagaattctgaatatagcactcctgtacaactagagcagaactatatagtatgtgaactccatgac aagatgaacatgctgtggtccttcatcaaaaatcatttaaaaagcaaagtcctcgctttctttacaagttgtaaacaggt gaagtatgtatatgaagcaatcaagcgcctccgacccggtgtgactatacttgctttacatggagggatgaatcagctta agagagtagattgctacaaccaattttgtcgtaaaaagaatgccatcttaattgccacagatatagctgctagagggctt gattttcctgctgtgaactgggttttacagatggactgcccagaagatgccaacacctacatacacagagttggtcgtac tgcaagatatgagaaagatggagaatctttgttagtcttgttaccatctgaggaagaagccatggtgcaactgcttcagg agaaaaaaatccctgtagagaaaattagagtaaacccaaagaaattctacaatatgcaaggtagaatggagtccaactta gcagcagataaagagctgaaagcatctgctcaaagagtgaagtatgtatatgaagcaatcaagcgcctccgacccggtgt gactatacttgctttacatggagggatgaatcagcttaagagagtagattgctacaaccaattttgtcgtaaaaagaatg ccatcttaattgccacagatatagctgctagagggcttgattttcctgctgtgaactgggttttacagatggactgccca gaagatgccaacacctacatacacagagtaggacgtactgcaagatatgagaaagatggagaatcgttgttagtcttgtt accatctgaggaagaagccatggttcaactgcttcaggagaaaaaaatccctgtagagaaaattagagtaaacccaaaga aattctacaatatgcaaggtagaatggagtccaacttagcagcagataaagagctgaaagcatctgctcaaagagcattt attggatatttacgctctgtgttcctgatgagcaacaagaaagtgtttgatgtccataaactagacactgataaatatgc agggtctctggggcttgccattccacctagagtgaggtttttgaaaagagaagagaaaaggatagctgagaggaacgaaa taaaaaagtcaaaagtgaaaaacgataaaaagttagaatcagtagaccaaagtgatgatttagaaagaaaactagacaat ttaaagagcagactggctcctgggagtgatgatgacagtgaagacaacagtaatgatgatgaaagtgaaagtgaaaatga tagagaagagggtcaaagtgaaagtgaaaatagtgatgaaagtgaaaatagtgataatgaagatattgatcaggtgtata gggaaagtggcaataagaaaggtcaagctcttgactttgatatcgaggacaatgtggaagatttatttacagttaagaga acagtcttaccgtccgactctgactccgatcaagaggaggtaactcttacagagactgctagttccttaaacggagataa tcaaactctgaagaaaaaaggaaaaaatcagaccaaggcagctgtagctaagaaacttttgaagaaaatggtgaaagtga atacaaaggttgtctttgatgaggaaggagagatggtgagggatgtactgaagaagccccaggcagagctgagtgagggg gaggagggagaggaggaggaggacagaggtattgatataggtaaagccaaactacgcatgaagaaggaagatcagataga taaacagctgtatagggagaaaattaaacagagacataaggaagaaagaattaaaaagaaggaaaaacttcgagctcaga aaagaaaagcagagcctgaagtagatgatgatgaggaggtagaggctgtgttagatgtcagaggagatgaggaggatgat gatcccctgagttatatacctgacccagataaggtgtatggtcccgaggacagtgatacagaacaggggtatagggaaat agccaatagtagtgatgaggaggaatacagcccacaattaaaaagaaggaaattgaaggacatgtcaccttccaatagtg ataatgaagacgatgatatctcagatgacaatgctagtgttagtgatggtgatagtgatgaagaagatgatgattctagc aatgaagatgatagtgacaatgatgatgatgatgacatggacacagaacatggtctggaagttgatgaagcaatagccat gaaattattaacaggaagaacttga |
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Protein
| Protein ID | pfu_aug2.0_1522.1_08419.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1522.1_08419.t1 MLPIDVSKIKQFTDFPLSKKTLQGLKLSKFDRPTEIQREAIGLALQGNDILGAAKTGSGKTLAFLLPVLECLYHQKWSPM DGLGALIISPTRELAYQTFEVLKRVGKAHDFSAGLVIGGKLLKEESTRINRTNIVVCTPGRLLQHMDETINFRADSLQIL VLDEADRILDMGFAKEMNAIIENLPNTRQTLLFSATQTKSVKDLARLSLQDPVYVSVHENSEYSTPVQLEQNYIVCELHD KMNMLWSFIKNHLKSKVLAFFTSCKQVKYVYEAIKRLRPGVTILALHGGMNQLKRVDCYNQFCRKKNAILIATDIAARGL DFPAVNWVLQMDCPEDANTYIHRVGRTARYEKDGESLLVLLPSEEEAMVQLLQEKKIPVEKIRVNPKKFYNMQGRMESNL AADKELKASAQRVKYVYEAIKRLRPGVTILALHGGMNQLKRVDCYNQFCRKKNAILIATDIAARGLDFPAVNWVLQMDCP EDANTYIHRVGRTARYEKDGESLLVLLPSEEEAMVQLLQEKKIPVEKIRVNPKKFYNMQGRMESNLAADKELKASAQRAF IGYLRSVFLMSNKKVFDVHKLDTDKYAGSLGLAIPPRVRFLKREEKRIAERNEIKKSKVKNDKKLESVDQSDDLERKLDN LKSRLAPGSDDDSEDNSNDDESESENDREEGQSESENSDESENSDNEDIDQVYRESGNKKGQALDFDIEDNVEDLFTVKR TVLPSDSDSDQEEVTLTETASSLNGDNQTLKKKGKNQTKAAVAKKLLKKMVKVNTKVVFDEEGEMVRDVLKKPQAELSEG EEGEEEEDRGIDIGKAKLRMKKEDQIDKQLYREKIKQRHKEERIKKKEKLRAQKRKAEPEVDDDEEVEAVLDVRGDEEDD DPLSYIPDPDKVYGPEDSDTEQGYREIANSSDEEEYSPQLKRRKLKDMSPSNSDNEDDDISDDNASVSDGDSDEEDDDSS NEDDSDNDDDDDMDTEHGLEVDEAIAMKLLTGRT |
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