Gene
| Gene Model ID | pfu_aug2.0_1537.1_24980 |
|---|---|
| Locus | scaffold1537.1 : 1 ... 10492 : + |
| To GenomeBrowser | scaffold1537.1:1..10492 |
| Genes list of scaffold | scaffold1537.1 |
| Synonym | pfu_aug1.0_1841.1_51428 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna repair protein rev1 isoform x1 | GO:0005488 GO:0044260 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1537.1_24980.t1 | 1 | 1 | IMS | 80 | 196 | 1.0e-30 | 106.5 | 5.4e-34 | 2.0e-30 | 105.5 |
| pfu_aug2.0_1537.1_24980.t1 | 1 | 1 | IMS_C | 275 | 402 | 2.4e-15 | 56.5 | 1.3e-18 | 4.7e-15 | 55.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1537.1_24980.t1 | gi|260825995|ref|XP_002607951.1| | hypothetical protein BRAFLDRAFT_213587 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1537.1_24980.t1 | gi|564241863|ref|XP_006277742.1| | PREDICTED: DNA repair protein REV1 isoform X3 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_1537.1_24980.t1 | gi|564241859|ref|XP_006277740.1| | PREDICTED: DNA repair protein REV1 isoform X1 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1537.1_24980.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1537.1_24980.t1 ggaagcctatagctgtgacacactctaaaggtaacggtaaagctcctacggtaccaggtagtgatgtagagctggagaga atgttatggaggggaggaaaatcaagtcctagaaaatctcctcatggtcaggtcggtggagcagcttccagagacactac aaaggaaggcggggcatcgagtaacggagtgaagtccctacttaccagcccagcaaaagcaccagaaaattataattcta tggcagaaatagcatcttgtagctatgaagcaagacaggcaggtgttaaaaatgggatgtttttgggaccagcgaagaag ttatgcccagatttaataacaataccgtacgactttgagggatatcaagaagtatctaaatgtctctatgatacagtagc cagttatacacatgagatagaggcagtgagctgtgatgagatgctagtggattgtacagatttattaacgagcacaggag ctgaaccattggaatttgcttccatgctgcgtgaagaaatatttgaaaaaactagatgcactgtctctattgggatggga tcaaatattttgattggaaaattggcaaacagaaaagcaaagccaaatggacagtattgtgtgaaaggggaggatgtact tgaatttatgaagtcacagaatgtacagaatctgccaggtgttggacggagtaccacagaaaaactgaagtcattacgca ttgaaatatgtgaagaactacagaaagccccccttagtttactacagaaagagtttggacccaaaacaggactgacctta tataagtactgtagaggagaagatgataggccagtgaaattagaacaagagagaaaatctgtctctgcagaaataaacta tggaatcaggtttaaacaagatgtggatgtagataattttctgatggagctgtccacagaagttcagaaaagactccagg atataaaaatgaaaggaaagactataacactgaaggtgatggtcaggcatgaagacgctcccatagaaacatctaaattc ttaggtcatgggatatgtaataatttttccaagtccactacactgctaacggccacagataatgctgatgttatacacag agaatgtgtaaccatcctgagaagctggaagcttgtagcctcagacttacgaggaatcggtatacaagtacaaagacttc aatctatcgcagatagcggtaaatctaaccagagtactctcaattttacagtctcaaagccagtcggatcaagtaaggaa cagagaggaaatcggacaaatggtgcatcatcaatgtctattgagggaggtacaggacatgccaatgttctggatactat cactgataatgaggatttacctgtgggtaatagtacaagggaaggatcattgtccaatcagccacctctacctaccttag atgtcatagactttacagatcctggattccaagtcaccatgacagagcgggactttcctaggcattacattgctgatcaa agaaaggaatcatcaagacaagtacagcaaactgctgagatcagtgatgttgtttcagtaactaatgatgtcccttgtaa gatgcaggcgagatctactatcagtttatgtggagctacctctataacggaaatacgagctctactgaacgagtggttac aacaacaacctgaaatggaagataatgaagtaatggtgacatacttgaatcagctgatatcaaaccagaatttagagcag atggcagttgtagtcagatttttaaacaggaaaaggaagcaactgagagataccttgtggcagaattcccttgatcacat tatatctgaagttcaaacatcgctgagaagctgttatggaggaccatttaaattgaacaaatag |
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Protein
| Protein ID | pfu_aug2.0_1537.1_24980.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1537.1_24980.t1 KPIAVTHSKGNGKAPTVPGSDVELERMLWRGGKSSPRKSPHGQVGGAASRDTTKEGGASSNGVKSLLTSPAKAPENYNSM AEIASCSYEARQAGVKNGMFLGPAKKLCPDLITIPYDFEGYQEVSKCLYDTVASYTHEIEAVSCDEMLVDCTDLLTSTGA EPLEFASMLREEIFEKTRCTVSIGMGSNILIGKLANRKAKPNGQYCVKGEDVLEFMKSQNVQNLPGVGRSTTEKLKSLRI EICEELQKAPLSLLQKEFGPKTGLTLYKYCRGEDDRPVKLEQERKSVSAEINYGIRFKQDVDVDNFLMELSTEVQKRLQD IKMKGKTITLKVMVRHEDAPIETSKFLGHGICNNFSKSTTLLTATDNADVIHRECVTILRSWKLVASDLRGIGIQVQRLQ SIADSGKSNQSTLNFTVSKPVGSSKEQRGNRTNGASSMSIEGGTGHANVLDTITDNEDLPVGNSTREGSLSNQPPLPTLD VIDFTDPGFQVTMTERDFPRHYIADQRKESSRQVQQTAEISDVVSVTNDVPCKMQARSTISLCGATSITEIRALLNEWLQ QQPEMEDNEVMVTYLNQLISNQNLEQMAVVVRFLNRKRKQLRDTLWQNSLDHIISEVQTSLRSCYGGPFKLNK |
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