Gene
| Gene Model ID | pfu_aug2.0_1538.1_28353 |
|---|---|
| Locus | scaffold1538.1 : 11476 ... 25060 : + |
| To GenomeBrowser | scaffold1538.1:11476..25060 |
| Genes list of scaffold | scaffold1538.1 |
| Synonym | pfu_aug1.0_18002.1_61766 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1538.1_28353.t1 | 1 | 1 | CAP_GLY | 31 | 98 | 3.6e-21 | 74.6 | 2.5e-24 | 6.2e-21 | 73.8 |
| pfu_aug2.0_1538.1_28353.t1 | 4 | 1 | LRR_8 | 147 | 162 | 4.0e-08 | 32.8 | 1.7 | 4200.0 | -2.4 |
| pfu_aug2.0_1538.1_28353.t1 | 4 | 2 | LRR_8 | 179 | 220 | 4.0e-08 | 32.8 | 7.9e-06 | 0.019 | 14.6 |
| pfu_aug2.0_1538.1_28353.t1 | 5 | 1 | LRR_4 | 183 | 221 | 2.1e-13 | 49.5 | 1.5e-08 | 3.8e-05 | 23.2 |
| pfu_aug2.0_1538.1_28353.t1 | 5 | 2 | LRR_4 | 259 | 299 | 2.1e-13 | 49.5 | 4.5e-05 | 0.11 | 12.1 |
| pfu_aug2.0_1538.1_28353.t1 | 4 | 3 | LRR_8 | 259 | 319 | 4.0e-08 | 32.8 | 6.1e-07 | 0.0015 | 18.2 |
| pfu_aug2.0_1538.1_28353.t1 | 5 | 3 | LRR_4 | 308 | 321 | 2.1e-13 | 49.5 | 0.0014 | 3.4 | 7.3 |
| pfu_aug2.0_1538.1_28353.t1 | 5 | 4 | LRR_4 | 308 | 355 | 2.1e-13 | 49.5 | 1.3e-06 | 0.0031 | 17.0 |
| pfu_aug2.0_1538.1_28353.t1 | 4 | 4 | LRR_8 | 333 | 374 | 4.0e-08 | 32.8 | 3.5e-05 | 0.087 | 12.5 |
| pfu_aug2.0_1538.1_28353.t1 | 5 | 5 | LRR_4 | 337 | 376 | 2.1e-13 | 49.5 | 1.1e-07 | 0.00027 | 20.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1538.1_28353.t1 | gi|524893906|ref|XP_005103461.1| | PREDICTED: tubulin-specific chaperone E-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1538.1_28353.t1 | gi|676458977|ref|XP_009055151.1| | hypothetical protein LOTGIDRAFT_189635 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1538.1_28353.t1 | gi|564256572|ref|XP_006267250.1| | PREDICTED: tubulin-specific chaperone E [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_1538.1_28353.t1 | gi|557261714|ref|XP_006016410.1| | PREDICTED: tubulin-specific chaperone E isoform X1 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_1538.1_28353.t1 | gi|699604278|ref|XP_009871179.1| | PREDICTED: tubulin-specific chaperone E, partial [Apaloderma vittatum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1538.1_28353.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1538.1_28353.t1 atgacctcatcaatttactttggcagaaaagttgcccaagttttgaacaatggtttagagttactgagggcagatggatc cctaatcaatgttaacgacagagtgtcatgtgacggctttatcgggacagtgaaatttattggtaatttgaatcaagaaa aaactaaaggtatttggttaggagtagattgggacaatgaagagagaggaaagcatgatggcagccttaacggagtacag tatttcacaacaagcacacccaaaagtggttcctttgttcgacccaaaaaagttaacggtggagtcagctgttatatggc cataaaggataggtatggcaaacaagaggaagaaaatgccggagtcattgctgacgaactttacgttgttgatagcaaga aaaagaaaaccatagtagagatggttggtgctgaattcataaatctaaaacaaagtaacctgaattatctacaagaagtt gtcctcaaagaaatgctggtctatggtgttggtatccatggcaacgacctgatgaaccacacaaggaatattcaggagtt agatatttctaaaaacctactgtcctcgtgggaaaatgtagcaaatatcgctaaatgtctgccaaatctggaaaacttaa acgtcagtgaaaacagattagaattacctaaggatccagaatcgttacgggtgtgcttccctaaagtcaaagttctcttt atgaatcgtatgaggtacagctgggaacagattatggtgtgcagttcgatgtttcccagacttgaacaattacacatctg ttttaactgtctgaagatgctcactgctccaaccaatcagtgtccagatctacgattaatcaacctggagtcaaacgaca tagactcctggcagcaagtcttagttctcaatcattttaacaaattagagtcgctgattttgaatgacaattcgatagaa tcagcaaccttcccagacgtcaaattcggcagtacgaccagcttctttccacaccttagatcgctatgcattaactacaa taaaatttctcagtggagtagtatagacgagctgaacaaattacagaaattagaagatcttcaaattacccataatcccc tgctagatactgtgacgttacaaacggccaggcagttacttatagccaaaatatctaccttaaagaaatgtaatcgtaca gaggccgatgcaaaggagaggaaggaggcagaggtagattatctgaagagatttggtccagactggctgaaggcgggagg agggcaggataccggtactataagtgaagaatttataactcagcatcctagatatctacattttatctcagtgtatggtg cagcagaaaactctgaaatgacacagaaacctaaaagacttaaagacagcctactacctattaaagttatagatcctgat aatcctaactcaaaagtagtagagaaaaaagtaccagcaaccatgacaatccagaagttgaagacgcntctgtga |
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Protein
| Protein ID | pfu_aug2.0_1538.1_28353.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1538.1_28353.t1 MTSSIYFGRKVAQVLNNGLELLRADGSLINVNDRVSCDGFIGTVKFIGNLNQEKTKGIWLGVDWDNEERGKHDGSLNGVQ YFTTSTPKSGSFVRPKKVNGGVSCYMAIKDRYGKQEEENAGVIADELYVVDSKKKKTIVEMVGAEFINLKQSNLNYLQEV VLKEMLVYGVGIHGNDLMNHTRNIQELDISKNLLSSWENVANIAKCLPNLENLNVSENRLELPKDPESLRVCFPKVKVLF MNRMRYSWEQIMVCSSMFPRLEQLHICFNCLKMLTAPTNQCPDLRLINLESNDIDSWQQVLVLNHFNKLESLILNDNSIE SATFPDVKFGSTTSFFPHLRSLCINYNKISQWSSIDELNKLQKLEDLQITHNPLLDTVTLQTARQLLIAKISTLKKCNRT EADAKERKEAEVDYLKRFGPDWLKAGGGQDTGTISEEFITQHPRYLHFISVYGAAENSEMTQKPKRLKDSLLPIKVIDPD NPNSKVVEKKVPATMTIQKLKTXL |
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