Gene
| Gene Model ID | pfu_aug2.0_1538.1_28355 |
|---|---|
| Locus | scaffold1538.1 : 40797 ... 64335 : - |
| To GenomeBrowser | scaffold1538.1:40797..64335 |
| Genes list of scaffold | scaffold1538.1 |
| Synonym | pfu_aug1.0_19561.1_54591 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1538.1_28355.t1 | 2 | 1 | MCM_N | 31 | 49 | 2.3e-06 | 28.1 | 1.0 | 1400.0 | -0.3 |
| pfu_aug2.0_1538.1_28355.t1 | 2 | 2 | MCM_N | 72 | 130 | 2.3e-06 | 28.1 | 8.8e-09 | 1.2e-05 | 25.7 |
| pfu_aug2.0_1538.1_28355.t1 | 3 | 1 | MCM | 296 | 596 | 0.0 | 781.3 | 0.0 | 0.0 | 411.6 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 1 | Mg_chelatase | 351 | 372 | 1.3e-14 | 53.9 | 0.0091 | 12.0 | 4.9 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 1 | Sigma54_activat | 351 | 372 | 3.4e-06 | 26.6 | 0.44 | 590.0 | -0.2 |
| pfu_aug2.0_1538.1_28355.t1 | 2 | 1 | AAA_5 | 354 | 470 | 2.4e-10 | 40.3 | 9.6e-07 | 0.0013 | 18.4 |
| pfu_aug2.0_1538.1_28355.t1 | 2 | 1 | AAA_3 | 357 | 469 | 8.7e-08 | 31.8 | 1.6e-05 | 0.022 | 14.3 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 2 | Mg_chelatase | 407 | 469 | 1.3e-14 | 53.9 | 4.2e-07 | 0.00057 | 19.1 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 2 | Sigma54_activat | 409 | 468 | 3.4e-06 | 26.6 | 0.00032 | 0.43 | 10.0 |
| pfu_aug2.0_1538.1_28355.t1 | 3 | 2 | MCM | 593 | 837 | 0.0 | 781.3 | 0.0 | 0.0 | 342.4 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 3 | Mg_chelatase | 599 | 620 | 1.3e-14 | 53.9 | 0.01 | 14.0 | 4.7 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 3 | Sigma54_activat | 599 | 620 | 3.4e-06 | 26.6 | 0.42 | 560.0 | -0.2 |
| pfu_aug2.0_1538.1_28355.t1 | 2 | 2 | AAA_5 | 602 | 718 | 2.4e-10 | 40.3 | 9.6e-07 | 0.0013 | 18.4 |
| pfu_aug2.0_1538.1_28355.t1 | 2 | 2 | AAA_3 | 605 | 717 | 8.7e-08 | 31.8 | 1.6e-05 | 0.022 | 14.3 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 4 | Mg_chelatase | 655 | 717 | 1.3e-14 | 53.9 | 4.2e-07 | 0.00057 | 19.1 |
| pfu_aug2.0_1538.1_28355.t1 | 4 | 4 | Sigma54_activat | 657 | 716 | 3.4e-06 | 26.6 | 0.00032 | 0.43 | 10.0 |
| pfu_aug2.0_1538.1_28355.t1 | 3 | 3 | MCM | 883 | 918 | 0.0 | 781.3 | 5.2e-09 | 7.0e-06 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1538.1_28355.t1 | gi|524895965|ref|XP_005104462.1| | PREDICTED: DNA replication licensing factor mcm5-A-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1538.1_28355.t1 | gi|676465835|ref|XP_009057372.1| | hypothetical protein LOTGIDRAFT_191134 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1538.1_28355.t1 | gi|291238652|ref|XP_002739225.1| | PREDICTED: DNA replication licensing factor mcm5-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1538.1_28355.t1 | gi|148228541|ref|NP_001080893.1| | DNA replication licensing factor mcm5-A [Xenopus laevis] | 0.0 |
| pfu_aug2.0_1538.1_28355.t1 | gi|284413774|ref|NP_001017327.2| | DNA replication licensing factor mcm5 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1538.1_28355.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1538.1_28355.t1 atggcagggttcgacgaagctggggtgttttacagcgataactttggatctgaagatcaaactgacgatggtcaaataaa tcgtcagcaagtgaagaagaggttcaaagatttcatccgacagtttcatgaaggaaacttctcttatcgttacagctcct ttacgttcttcatagatattttatgcagtataaacatgatcagaattcgtaattgcgttacacagtttgaagacgctgcc aaggaagtagctgatgaggtgacccatccccgacctgagggggaggaggaggtcgtcgacgtacaagtcatgctacattc taactccaatccctgtagtatcagagaactgaagtctgagcagatggccaggcttgtgaggatcccgggtatcgtaatcg ctgcgtccgccatcaaatctaaggccactcgtctcaccattcagtgccgcagctgcaaaaatgttgtaaacaacatccca gtcaatccgggtctggaaggctatgccctacccaggaagtgtaatgtggaacaagctggacggcctaagtgccctgtgga tcctttctatattgtaccagacaaatgtaaatgtgtagacttccaagtgcttaagctacaggaagctcccgaggctgttc cgaatggagaaatgccacgacacatgcaacttttctgtgatagatatatgtgtgataaagttgtgcctggtaacagagtc actgttgttggaatatactcaatcaagaaaactggaaaaccaacaaaagggggtggtcgtgacaaagttaacgtcggtat caggagtccgtatttccgagtcctggggatccaggtggacacagcaggaacgggacgaacgatgaattctccgatcacac ccgaggatgaagagcagttccgaaggctggcaagctcacctaatatctacgagacgctagccaaaagtatcgcaccctca atttacggaagtgttgatatcaaaaaggccatagcttgcttactgttcggagggtcaagaaaaagaatgccagatggtct aatgaggagaggagatataaacttactgatgttaggagatccaggtacggccaagtctcagctactgaagtttgtggaac gatgctccccaattggtgtttatacgtcggggaagggaagtagtgctgctggtctaacagcctcggtgatgagagatcca cagtcgaggaatttcatcatggaaggcggggctatggtattggctgatgggggcgtggtctgtatagatgagtttgacaa gatgagagaagatgacagagtagctatacacgaggctatggaacaacaaaccatctctatagctaaggctggaatcacga ctaccttgaattccagatgctcggttcttgcagctgctaacagtgtgtacggcagatgggacgagacaaaaggagaagaa aatatcgactttatgccgaccattctctccagatttgacatgattttcattgtcaaggacgaacacgatgaaagcagaga tacgacattagccaaacacgtcatgaacattcaccttaatgcattacaaatgacagaggaacaggcagaaggggaaatca gtctgaacaccctgaaaaaatacattgcttattgtcgagcgaaatgtgggccaagactttcacctggcgcagcagagaaa ttgaagaacagatatgtgttgatgagaaacggtgctggtgaatatgaaagggaaacaggaaagaaaatatccattcccat cacagttagaatgccagatggtctaatgaggagaggagatataaacttgctgatgttaggagatccaggtacggccaagt ctcagctactgaagtttgtggaacgatgctcgcctattggtgtttatacttcggggaagggaagtagtgctgccggtcta acggcctcggtgatgagagatccacagtcgaggaatttcatcatggaaggcggggctatggtattggctgatgggggcgt ggtctgcatagacgagtttgacaagatgagagaagatgacagagtagccatacacgaggctatggaacaacaaaccatct ctatagctaaggctggaatcacgactaccttgaattccagatgctcagttcttgcagctgctaacagtgtgtatggcaga tgggacgagacaaaaggagaagaaaatatcgactttatgccgaccattctctccagatttgacatgattttcatcgtcaa ggacgaacatgatgaaagcagagatacgacgttagccaaacacgtcatgaacattcaccttaatgcattacaaatgacag aggaacaggcagaaggggaaatcagtctgaacaccctgaaaaaatacatcgcttattgtcgagcgaaatgtgggccaaga ctgtctccaggggcagcagagaaactgaagaacagatacgtgttaatgagaaatggtgctggtgaatatgagagggaaac gggaaagaaaatatccattcccatcacagttagctcacctgagccaaaggctctagtgagctattgtcatagcgatccgt ccggcgtccgtcgtctgtctgtcgtaaacttttcacattttcaagttcttctcaagaatggcttatgggattttgatgaa acttggcagttggaggccattattcgcatgtcagaatctcttgccaagatgaagctacggccgtttgcgtcggaggttga cgtagatgaagcgttgagattgttccaagtatccacactggacgctgccatgtctggaaacttgtccggtgtggagggat ttactacagaggaagatcaggaattattgtctcgtatagaaaaacagatcaagagaagatttatcattggttctcaggtg tcagaacacgctataatacaggatttcaccagacagaaatacccagagcgatcaatccagaaagtgttacactttatgtt gaggagaggagagattcagcatcgcatgcagaggaaaatgctgtaccgcgtcaagtga |
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Protein
| Protein ID | pfu_aug2.0_1538.1_28355.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1538.1_28355.t1 MAGFDEAGVFYSDNFGSEDQTDDGQINRQQVKKRFKDFIRQFHEGNFSYRYSSFTFFIDILCSINMIRIRNCVTQFEDAA KEVADEVTHPRPEGEEEVVDVQVMLHSNSNPCSIRELKSEQMARLVRIPGIVIAASAIKSKATRLTIQCRSCKNVVNNIP VNPGLEGYALPRKCNVEQAGRPKCPVDPFYIVPDKCKCVDFQVLKLQEAPEAVPNGEMPRHMQLFCDRYMCDKVVPGNRV TVVGIYSIKKTGKPTKGGGRDKVNVGIRSPYFRVLGIQVDTAGTGRTMNSPITPEDEEQFRRLASSPNIYETLAKSIAPS IYGSVDIKKAIACLLFGGSRKRMPDGLMRRGDINLLMLGDPGTAKSQLLKFVERCSPIGVYTSGKGSSAAGLTASVMRDP QSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVYGRWDETKGEE NIDFMPTILSRFDMIFIVKDEHDESRDTTLAKHVMNIHLNALQMTEEQAEGEISLNTLKKYIAYCRAKCGPRLSPGAAEK LKNRYVLMRNGAGEYERETGKKISIPITVRMPDGLMRRGDINLLMLGDPGTAKSQLLKFVERCSPIGVYTSGKGSSAAGL TASVMRDPQSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVYGR WDETKGEENIDFMPTILSRFDMIFIVKDEHDESRDTTLAKHVMNIHLNALQMTEEQAEGEISLNTLKKYIAYCRAKCGPR LSPGAAEKLKNRYVLMRNGAGEYERETGKKISIPITVSSPEPKALVSYCHSDPSGVRRLSVVNFSHFQVLLKNGLWDFDE TWQLEAIIRMSESLAKMKLRPFASEVDVDEALRLFQVSTLDAAMSGNLSGVEGFTTEEDQELLSRIEKQIKRRFIIGSQV SEHAIIQDFTRQKYPERSIQKVLHFMLRRGEIQHRMQRKMLYRVK |
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