Gene
| Gene Model ID | pfu_aug2.0_1538.1_28358 |
|---|---|
| Locus | scaffold1538.1 : 98910 ... 114765 : - |
| To GenomeBrowser | scaffold1538.1:98910..114765 |
| Genes list of scaffold | scaffold1538.1 |
| Synonym | pfu_aug1.0_726.1_22267 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1538.1_28358.t1 | 4 | 1 | zf-TRAF | 53 | 84 | 8.9e-10 | 38.8 | 5.4 | 4500.0 | -1.9 |
| pfu_aug2.0_1538.1_28358.t1 | 4 | 2 | zf-TRAF | 107 | 129 | 8.9e-10 | 38.8 | 0.0047 | 3.8 | 7.9 |
| pfu_aug2.0_1538.1_28358.t1 | 4 | 3 | zf-TRAF | 129 | 184 | 8.9e-10 | 38.8 | 2.1e-10 | 1.7e-07 | 31.5 |
| pfu_aug2.0_1538.1_28358.t1 | 4 | 4 | zf-TRAF | 185 | 209 | 8.9e-10 | 38.8 | 5.9e-05 | 0.048 | 14.0 |
| pfu_aug2.0_1538.1_28358.t1 | 1 | 1 | MATH | 374 | 512 | 2.1e-27 | 95.7 | 8.9e-30 | 7.3e-27 | 93.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1538.1_28358.t1 | gi|675409713|ref|XP_008917733.1| | PREDICTED: TNF receptor-associated factor 3 isoform X2 [Manacus vitellinus] | 0.0 |
| pfu_aug2.0_1538.1_28358.t1 | gi|524999888|ref|XP_005047684.1| | PREDICTED: TNF receptor-associated factor 3 isoform X4 [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_1538.1_28358.t1 | gi|669271974|ref|XP_008627990.1| | PREDICTED: TNF receptor-associated factor 3 isoform X2 [Corvus brachyrhynchos] | 0.0 |
| pfu_aug2.0_1538.1_28358.t1 | gi|677934025|ref|XP_009069049.1| | PREDICTED: TNF receptor-associated factor 3 isoform X2 [Acanthisitta chloris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1538.1_28358.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1538.1_28358.t1 atggcaacacaaaagtcaccaatgatagcgaagaaggcattggcaaaaataaatgaaagtgaaccacgttacagcataga gaagccaaagttcatagaccttgcagataaatacctatgtataatctgtggtaatgtgcttaataatgcaatgcaagtgc cgtgtggtcaccaactttgtgaggtgccatgcgttgacgatttattcaaagacaaagacatcacaacatgtccagtcggc gaggaagagtgcttggaaccatttccaaaaacagaggttttcaaggacatatgcaccaggaaagaagtaatgttgctgaa agtctgctgtatatatgtagaggaaggctgtaaagaaataatgccatggaggacacttgaaaaacatgtggcgaaatgtg agtatcgtcttctaccttgtacaaatgaagggtgtgacgaaaaaataccagcaaatcagctggaagaacatagtctcaaa acatgccaatacttacctgttacttgttcatattgtgggcttacaattcctgtttgtaaactgaaggatcatcacacata tgaatgtgaaaaatttccagagaaatgtccaaataactgtggggttggtgagatgccaagagacaagggtttggataaag aagtgagtgaacatgaacgatcagcaactgatgttcacctgaagcaggtgatcgagttcacaaacaaaactaacgatcag aatcaggctttgttgctggaaatggaggctataaaagaagagagggatcaactgaagagatctgttgacgatatgcatga aacaaacagaaaaatgaaggaggaagttgacacgttcaacaaggattttacaaaagaattgaagagaaaaatggttgctt tgaccgaaagagttataaagttggagagaagcatcggaaatcttcccaagagagaccttgttgaaagacaggaaagagag ttatcttcccttaaggaagagcaaacacaattccaagagagggtcaacagactagaacgggcggggccaattggaggagc tgggaatgaggctccagcgtcagacctacgcttccaagttttggagaccgcaaactatgagggcgtcttaatgtggaaaa tcagagattacaccagacgtaaacaagaagccgttgccgggaggaccgtgtccctgtacagccagccgttctataccagc aggtacgggtacaagatgtgcgccagggtctacctcaacggtgacggcatggggaaagggacacacctgtccctgttctt tgttgtcatgagaggcgagtacgacgcactcctacaatggccgttccagcacagggtgaccttgatgttgctggaccagc aagacggcagacgacatgtacatgactccttccagcccgaccccacgagctcatcgttcgtccgacccacgtctgaaatg aacatcgcgaccggatgtccgctgttcgtcgcgcatgccgtcatggagacggatacctacaagagagacgatacgatttt catcaaaatcaaagttacagaaaacaccgacaggacaacagttgtctctgataaattggccaatatgagataa |
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Protein
| Protein ID | pfu_aug2.0_1538.1_28358.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1538.1_28358.t1 MATQKSPMIAKKALAKINESEPRYSIEKPKFIDLADKYLCIICGNVLNNAMQVPCGHQLCEVPCVDDLFKDKDITTCPVG EEECLEPFPKTEVFKDICTRKEVMLLKVCCIYVEEGCKEIMPWRTLEKHVAKCEYRLLPCTNEGCDEKIPANQLEEHSLK TCQYLPVTCSYCGLTIPVCKLKDHHTYECEKFPEKCPNNCGVGEMPRDKGLDKEVSEHERSATDVHLKQVIEFTNKTNDQ NQALLLEMEAIKEERDQLKRSVDDMHETNRKMKEEVDTFNKDFTKELKRKMVALTERVIKLERSIGNLPKRDLVERQERE LSSLKEEQTQFQERVNRLERAGPIGGAGNEAPASDLRFQVLETANYEGVLMWKIRDYTRRKQEAVAGRTVSLYSQPFYTS RYGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLQWPFQHRVTLMLLDQQDGRRHVHDSFQPDPTSSSFVRPTSEM NIATGCPLFVAHAVMETDTYKRDDTIFIKIKVTENTDRTTVVSDKLANMR |
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