Gene
| Gene Model ID | pfu_aug2.0_154.1_13685 |
|---|---|
| Locus | scaffold154.1 : 66907 ... 67525 : - |
| To GenomeBrowser | scaffold154.1:66907..67525 |
| Genes list of scaffold | scaffold154.1 |
| Synonym | pfu_aug1.0_11853.1_10384 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx11-like | GO:0003677 GO:0004003 GO:0005524 GO:0005634 GO:0006139 GO:0032508 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_154.1_13685.t1 | 1 | 1 | Helicase_C_2 | 1 | 82 | 5.8e-25 | 88.1 | 4.6e-29 | 6.8e-25 | 87.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_154.1_13685.t1 | gi|676441248|ref|XP_009049435.1| | hypothetical protein LOTGIDRAFT_112727 [Lottia gigantea] | 2.94273e-44 |
| pfu_aug2.0_154.1_13685.t1 | gi|524914646|ref|XP_005112135.1| | PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Aplysia californica] | 6.02558e-44 |
| pfu_aug2.0_154.1_13685.t1 | gi|198436769|ref|XP_002122486.1| | PREDICTED: probable ATP-dependent RNA helicase DDX11 [Ciona intestinalis] | 8.99634e-43 |
| pfu_aug2.0_154.1_13685.t1 | gi|390367138|ref|XP_792082.3| | PREDICTED: probable ATP-dependent RNA helicase DDX11 [Strongylocentrotus purpuratus] | 3.0e-40 |
| pfu_aug2.0_154.1_13685.t1 | gi|585721748|ref|XP_006813326.1| | PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Saccoglossus kowalevskii] | 2.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_154.1_13685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_154.1_13685.t1 atgccgtatccaaatatcaagtcaccagaactccaggagaagatggagtatctcaacaccaacttcaagccggattccga gggacgtagagcaggccaagtacactatgagaatctatgcatgaaagctgtcaaccaatcaataggtcgcgctattcgtc accgtggtgattacgccacaattttgttgcttgacaagcggtacggtagaccgagtgtcgtatccaaattgccgaactgg atcgtcaaaagtttgatcaagactgagaagtatggagttgcgatatcaaatgtctctaaatttttcagtaacaagaagtg a |
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Protein
| Protein ID | pfu_aug2.0_154.1_13685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_154.1_13685.t1 MPYPNIKSPELQEKMEYLNTNFKPDSEGRRAGQVHYENLCMKAVNQSIGRAIRHRGDYATILLLDKRYGRPSVVSKLPNW IVKSLIKTEKYGVAISNVSKFFSNKK |
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