Gene
| Gene Model ID | pfu_aug2.0_154.1_13696 |
|---|---|
| Locus | scaffold154.1 : 281243 ... 305681 : + |
| To GenomeBrowser | scaffold154.1:281243..305681 |
| Genes list of scaffold | scaffold154.1 |
| Synonym | pfu_aug1.0_6887.1_60144 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho gtpase-activating protein 39-like | GO:0005856 GO:0007165 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_154.1_13696.t1 | 2 | 1 | MyTH4 | 12 | 127 | 1.5e-24 | 86.1 | 1.6e-27 | 3.4e-24 | 84.9 |
| pfu_aug2.0_154.1_13696.t1 | 1 | 1 | RhoGAP | 158 | 300 | 2.4e-32 | 111.6 | 1.9e-35 | 4.0e-32 | 110.9 |
| pfu_aug2.0_154.1_13696.t1 | 2 | 2 | MyTH4 | 331 | 348 | 1.5e-24 | 86.1 | 2.0 | 4200.0 | -2.4 |
| pfu_aug2.0_154.1_13696.t1 | 1 | 1 | PHD | 409 | 453 | 2.6e-08 | 33.4 | 3.5e-11 | 7.5e-08 | 31.9 |
| pfu_aug2.0_154.1_13696.t1 | 1 | 1 | PHD_2 | 419 | 452 | 7.2e-06 | 25.2 | 6.3e-09 | 1.3e-05 | 24.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_154.1_13696.t1 | gi|676432979|ref|XP_009046750.1| | hypothetical protein LOTGIDRAFT_171933 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_154.1_13696.t1 | gi|37994603|gb|AAH60065.1| | D15Wsu169e protein, partial [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_154.1_13696.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_154.1_13696.t1 atgggtgatcgtaaaactaagctgacccagatggctgctgcacaggaagtgatcaataaggggtggagcatcattaacct gcgggatgaaatctacatgcaactctgtaaacagaccaccgaaaatagaaaaggtgatagcctacagaaaggctgggaac taatggcaatctgtctcaacttcttccctccaactgtaaagttccatagctatttagagagctacatagcacgacactcc gaagatagcccagaaaacatgaacacagtggtgcctattagtcattttgccatacagtgccaaagacgactggacaagat gatgcagagtggaccaaagaaaggacagagaaagccaaatatggatgaaatagagcaggcaaagaaatcagtatttaatc cttcaatgtttgggagcactctagaggacataatgatattacaaaaagatcggttttcggagcgacggttgccatggata cagacaacattatcagaggaggtgctccggctaaatggagctcaaactgagggcattttcagggtaccgggggacattga tgaagtgaatgcactgaagctgaaatgtgatcagtggtcactgcctacagactgtcctgaccctcacatccctgcttccc tactcaaactatggtacagagagctacatgacccccttatacccgcagaattctaccacgattgtatagaaaattaccag agtccagacgcggccattgaagttgttagtcgactccctgatattaatagactagtacttgcatacttaatacgcttcct acaggtatttgctgcagaagagaattccaaagtcaccaagatggatgtcaataacttagccatggtgatggcaccaaatt gtttacggtctccaaagaagagaaaatctctagtaaaaggcggattcgagccacctggttcgactggtcctagaagaagg aaaaccaaagaagatttctatgctttctgtaccatgatactagagtatacccagtatgaatctactaggcgtgatgaaat aagaagtcagcataacttaagcccattggatagcagtggcagtacagctgaaagttatacctcagatacaactctatctg cgggaagtcccagccataactctagtgctgccgatcttaatgactcagatgaagactcccaagttcagaatttctcagat gatgagtcacatgacctcattacttgtttctgtatgaagccgtacgcaggaagaccaatgatcgagtgttccgaatgcga gacgtggattcacttatcgtgtgccaaaatccgaaaaaacaatattcctgatacatatgtctgtcagctgtgtaaagact ccaaatttaccgcaagaaaatcaggtcgtgttcggactgagaacaacaaattgtcgttataa |
|
Protein
| Protein ID | pfu_aug2.0_154.1_13696.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_154.1_13696.t1 MGDRKTKLTQMAAAQEVINKGWSIINLRDEIYMQLCKQTTENRKGDSLQKGWELMAICLNFFPPTVKFHSYLESYIARHS EDSPENMNTVVPISHFAIQCQRRLDKMMQSGPKKGQRKPNMDEIEQAKKSVFNPSMFGSTLEDIMILQKDRFSERRLPWI QTTLSEEVLRLNGAQTEGIFRVPGDIDEVNALKLKCDQWSLPTDCPDPHIPASLLKLWYRELHDPLIPAEFYHDCIENYQ SPDAAIEVVSRLPDINRLVLAYLIRFLQVFAAEENSKVTKMDVNNLAMVMAPNCLRSPKKRKSLVKGGFEPPGSTGPRRR KTKEDFYAFCTMILEYTQYESTRRDEIRSQHNLSPLDSSGSTAESYTSDTTLSAGSPSHNSSAADLNDSDEDSQVQNFSD DESHDLITCFCMKPYAGRPMIECSECETWIHLSCAKIRKNNIPDTYVCQLCKDSKFTARKSGRVRTENNKLSL |
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